Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC009159.2-201ENST00000617603 606 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 AC013470.4-201ENST00000619978 986 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 AP001052.1-201ENST00000626421 99 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
USP39Q53GS9 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 AC020978.6-201ENST00000571197 3177 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 LRTOMT-210ENST00000447974 2007 ntTSL 2 BASIC6.91□□□□□ -1.3
USP39Q53GS9 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.91□□□□□ -1.3
USP39Q53GS9 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
USP39Q53GS9 AC129502.1-201ENST00000623261 1654 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 NPL-212ENST00000614468 2376 ntTSL 5 BASIC6.9□□□□□ -1.3
USP39Q53GS9 AL049634.1-201ENST00000453770 1720 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.9□□□□□ -1.3
USP39Q53GS9 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
USP39Q53GS9 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
USP39Q53GS9 LINC01013-201ENST00000422700 1831 ntTSL 5 BASIC6.9□□□□□ -1.3
USP39Q53GS9 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC6.9□□□□□ -1.3
USP39Q53GS9 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
USP39Q53GS9 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
USP39Q53GS9 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
USP39Q53GS9 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
USP39Q53GS9 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
USP39Q53GS9 SNORD35A-201ENST00000363389 86 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 RN7SKP237-201ENST00000364663 301 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 UQCRFS1P3-201ENST00000407697 385 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 RN7SKP188-201ENST00000410789 317 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC6.9□□□□□ -1.3
USP39Q53GS9 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC6.9□□□□□ -1.3
USP39Q53GS9 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC6.9□□□□□ -1.3
USP39Q53GS9 GPN3P1-201ENST00000423883 535 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 AC115285.1-201ENST00000424879 736 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 AC079807.1-201ENST00000429993 481 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 RPS10P21-201ENST00000430654 475 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC6.9□□□□□ -1.3
USP39Q53GS9 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC6.9□□□□□ -1.3
USP39Q53GS9 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC6.9□□□□□ -1.3
USP39Q53GS9 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.9□□□□□ -1.3
USP39Q53GS9 CEACAMP5-201ENST00000448037 961 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 AC068491.1-201ENST00000449539 1241 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC6.9□□□□□ -1.3
USP39Q53GS9 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
USP39Q53GS9 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC6.9□□□□□ -1.3
USP39Q53GS9 NMNAT1P3-201ENST00000457517 888 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC6.9□□□□□ -1.3
USP39Q53GS9 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.9□□□□□ -1.3
USP39Q53GS9 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC6.9□□□□□ -1.3
USP39Q53GS9 AC005017.1-201ENST00000482002 490 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC6.9□□□□□ -1.3
USP39Q53GS9 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC6.9□□□□□ -1.3
USP39Q53GS9 AC023538.1-201ENST00000534576 736 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC6.9□□□□□ -1.3
USP39Q53GS9 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.9□□□□□ -1.3
USP39Q53GS9 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC6.9□□□□□ -1.3
USP39Q53GS9 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC6.9□□□□□ -1.3
USP39Q53GS9 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC6.9□□□□□ -1.3
USP39Q53GS9 AL049838.1-201ENST00000563647 981 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 ACTG1P15-201ENST00000570019 1063 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.3
USP39Q53GS9 AC005899.3-201ENST00000580360 271 ntTSL 3 BASIC6.9□□□□□ -1.3
USP39Q53GS9 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC6.9□□□□□ -1.3
USP39Q53GS9 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC6.9□□□□□ -1.3
USP39Q53GS9 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.9□□□□□ -1.3
USP39Q53GS9 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
USP39Q53GS9 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC6.9□□□□□ -1.3
USP39Q53GS9 ELOCP35-201ENST00000604289 336 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 AC106052.1-201ENST00000608029 497 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 AP001033.2-201ENST00000609701 1003 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 AC122108.2-201ENST00000611946 526 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 AC097641.3-201ENST00000613523 464 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 MIR6071-201ENST00000616741 78 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.9□□□□□ -1.3
USP39Q53GS9 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
USP39Q53GS9 AL513185.3-201ENST00000433335 1300 ntBASIC6.9□□□□□ -1.3
USP39Q53GS9 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
USP39Q53GS9 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC6.9□□□□□ -1.31
USP39Q53GS9 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
USP39Q53GS9 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC6.9□□□□□ -1.31
USP39Q53GS9 AP001002.1-201ENST00000625148 1513 ntBASIC6.9□□□□□ -1.31
USP39Q53GS9 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC6.9□□□□□ -1.31
USP39Q53GS9 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
USP39Q53GS9 MED6-212ENST00000615788 1700 ntTSL 5 BASIC6.9□□□□□ -1.31
USP39Q53GS9 USP9YP3-201ENST00000434481 1766 ntBASIC6.9□□□□□ -1.31
USP39Q53GS9 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
USP39Q53GS9 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
USP39Q53GS9 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 AC022819.1-201ENST00000563495 3910 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
USP39Q53GS9 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 AC005839.1-201ENST00000624148 3213 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC6.89□□□□□ -1.31
USP39Q53GS9 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms