Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CXCL1P09341 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
CXCL1P09341 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC4.81□□□□□ -1.64
CXCL1P09341 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CXCL1P09341 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC4.81□□□□□ -1.64
CXCL1P09341 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC4.81□□□□□ -1.64
CXCL1P09341 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
CXCL1P09341 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL1P09341 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CXCL1P09341 AL603750.1-201ENST00000624216 1717 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL1P09341 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL1P09341 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC4.8□□□□□ -1.64
CXCL1P09341 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL1P09341 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL1P09341 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CXCL1P09341 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL1P09341 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL1P09341 ENKUR-202ENST00000376363 1318 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL1P09341 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL1P09341 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC4.8□□□□□ -1.64
CXCL1P09341 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC4.8□□□□□ -1.64
CXCL1P09341 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
CXCL1P09341 RN7SKP236-201ENST00000410635 284 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 RTCA-AS1-201ENST00000421185 423 ntTSL 3 BASIC4.8□□□□□ -1.64
CXCL1P09341 SETP9-201ENST00000423837 832 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 PPIL1P1-201ENST00000423936 499 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AC006013.1-201ENST00000424888 758 ntTSL 3 BASIC4.8□□□□□ -1.64
CXCL1P09341 PRPS1P2-201ENST00000430496 937 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC4.8□□□□□ -1.64
CXCL1P09341 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL1P09341 RPL26P30-201ENST00000453533 435 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC4.8□□□□□ -1.64
CXCL1P09341 RN7SL492P-201ENST00000460700 295 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 RN7SL145P-201ENST00000469955 296 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC4.8□□□□□ -1.64
CXCL1P09341 ANK3-213ENST00000486349 493 ntTSL 2 BASIC4.8□□□□□ -1.64
CXCL1P09341 TRBV5-2-201ENST00000489095 273 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 RPL10P7-201ENST00000495649 625 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AL135933.1-201ENST00000498657 802 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AL390198.2-201ENST00000510553 222 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC4.8□□□□□ -1.64
CXCL1P09341 TOMM22P4-201ENST00000511318 336 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 OR52H2P-201ENST00000514607 902 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 IGKV1D-22-201ENST00000518953 324 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 IGHVIII-25-1-201ENST00000522143 241 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AC246817.2-201ENST00000523971 577 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL1P09341 OR4A43P-201ENST00000532938 908 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL1P09341 AC244502.2-201ENST00000543361 851 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AC084033.2-201ENST00000551532 967 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC4.8□□□□□ -1.64
CXCL1P09341 DPPA3P2-202ENST00000557188 1219 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AL132640.1-201ENST00000559594 619 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC4.8□□□□□ -1.64
CXCL1P09341 AC009852.2-201ENST00000567898 485 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 MIR4660-201ENST00000583549 74 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AP005131.5-201ENST00000585817 498 ntTSL 3 BASIC4.8□□□□□ -1.64
CXCL1P09341 AC005208.1-202ENST00000587325 725 ntTSL 3 BASIC4.8□□□□□ -1.64
CXCL1P09341 ZNF569-205ENST00000589833 762 ntTSL 3 BASIC4.8□□□□□ -1.64
CXCL1P09341 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL1P09341 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL1P09341 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC4.8□□□□□ -1.64
CXCL1P09341 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC4.8□□□□□ -1.64
CXCL1P09341 CARSP1-201ENST00000603171 889 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 DIMT1P1-201ENST00000603970 763 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 OR51C1P-201ENST00000608504 942 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AC096708.4-201ENST00000620563 552 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 AC003992.1-201ENST00000635364 557 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 CCDC196-207ENST00000636229 1107 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
CXCL1P09341 5_8S_rRNA.6-201ENST00000637374 152 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 OR7E91P-202ENST00000642062 1198 ntBASIC4.8□□□□□ -1.64
CXCL1P09341 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL1P09341 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL1P09341 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL1P09341 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL1P09341 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.8□□□□□ -1.64
CXCL1P09341 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL1P09341 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL1P09341 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL1P09341 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL1P09341 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
CXCL1P09341 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 AL137058.3-201ENST00000624531 3099 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 NDFIP2-206ENST00000620924 2324 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CXCL1P09341 AC023886.2-201ENST00000321285 411 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CXCL1P09341 MIR128-2-201ENST00000384893 84 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 UBBP1-201ENST00000392399 473 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
CXCL1P09341 AL358178.1-201ENST00000407698 397 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 LINC02470-201ENST00000412084 979 ntTSL 2 BASIC4.79□□□□□ -1.64
CXCL1P09341 AL929472.1-201ENST00000417484 429 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms