Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC5.95□□□□□ -1.46
HOXD4P09016 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC5.95□□□□□ -1.46
HOXD4P09016 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC5.95□□□□□ -1.46
HOXD4P09016 AC084121.1-201ENST00000533882 835 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXD4P09016 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXD4P09016 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.95□□□□□ -1.46
HOXD4P09016 AP003115.1-201ENST00000569849 463 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 AC063977.7-201ENST00000594454 337 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.95□□□□□ -1.46
HOXD4P09016 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC5.95□□□□□ -1.46
HOXD4P09016 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
HOXD4P09016 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
HOXD4P09016 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 PSMC1P6-201ENST00000477233 1319 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 AC018628.1-201ENST00000624147 3819 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 CA10-204ENST00000570565 2276 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXD4P09016 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.94□□□□□ -1.46
HOXD4P09016 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
HOXD4P09016 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.94□□□□□ -1.46
HOXD4P09016 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 AC009779.8-201ENST00000641684 4384 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.94□□□□□ -1.46
HOXD4P09016 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
HOXD4P09016 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC5.94□□□□□ -1.46
HOXD4P09016 OR7A2P-201ENST00000304105 930 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 RNA5SP122-201ENST00000384457 108 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC5.94□□□□□ -1.46
HOXD4P09016 AC099782.1-201ENST00000425889 474 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 AC245884.2-201ENST00000426257 404 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 KCTD9P1-201ENST00000430462 1167 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 KATNBL1P2-201ENST00000433311 835 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC5.94□□□□□ -1.46
HOXD4P09016 EIF5AP4-201ENST00000441206 465 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 GAPDHP33-201ENST00000443168 1013 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXD4P09016 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXD4P09016 SULT1D1P-201ENST00000458020 882 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 RN7SL362P-201ENST00000494228 267 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 AC112484.3-201ENST00000505910 329 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 AC131392.1-201ENST00000506490 633 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC5.94□□□□□ -1.46
HOXD4P09016 IGHV7-34-1-201ENST00000519200 350 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.94□□□□□ -1.46
HOXD4P09016 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.94□□□□□ -1.46
HOXD4P09016 AL162632.2-201ENST00000553933 399 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.94□□□□□ -1.46
HOXD4P09016 AC023968.1-201ENST00000560719 475 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 CTSLP2-201ENST00000580501 394 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXD4P09016 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 MIR6721-201ENST00000617181 87 ntBASIC5.94□□□□□ -1.46
HOXD4P09016 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXD4P09016 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXD4P09016 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC5.94□□□□□ -1.46
HOXD4P09016 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.94□□□□□ -1.46
HOXD4P09016 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
HOXD4P09016 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC5.94□□□□□ -1.46
HOXD4P09016 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXD4P09016 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
HOXD4P09016 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC5.93□□□□□ -1.46
HOXD4P09016 AL033543.1-201ENST00000623440 13454 ntBASIC5.93□□□□□ -1.46
HOXD4P09016 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
HOXD4P09016 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC5.93□□□□□ -1.46
HOXD4P09016 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
HOXD4P09016 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HOXD4P09016 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC5.93□□□□□ -1.46
HOXD4P09016 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
HOXD4P09016 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
HOXD4P09016 SNORA70H-201ENST00000383910 135 ntBASIC5.93□□□□□ -1.46
HOXD4P09016 SNORA70J-201ENST00000384182 135 ntBASIC5.93□□□□□ -1.46
HOXD4P09016 RPL9P21-201ENST00000392269 505 ntBASIC5.93□□□□□ -1.46
HOXD4P09016 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HOXD4P09016 RPL12P23-201ENST00000405880 490 ntBASIC5.93□□□□□ -1.46
HOXD4P09016 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HOXD4P09016 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.93□□□□□ -1.46
HOXD4P09016 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
HOXD4P09016 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.93□□□□□ -1.46
HOXD4P09016 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 134.4 ms