Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
SIX2Q9NPC8 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SIX2Q9NPC8 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.28■■□□□ 1
SIX2Q9NPC8 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.28■■□□□ 1
SIX2Q9NPC8 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.28■■□□□ 1
SIX2Q9NPC8 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.28■■□□□ 1
SIX2Q9NPC8 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SIX2Q9NPC8 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.28■■□□□ 1
SIX2Q9NPC8 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
SIX2Q9NPC8 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SIX2Q9NPC8 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.28■■□□□ 1
SIX2Q9NPC8 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SIX2Q9NPC8 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SIX2Q9NPC8 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.28■■□□□ 1
SIX2Q9NPC8 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.27■■□□□ 1
SIX2Q9NPC8 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SIX2Q9NPC8 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SIX2Q9NPC8 Z82202.1-201ENST00000623446 1880 ntBASIC21.27■■□□□ 1
SIX2Q9NPC8 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SIX2Q9NPC8 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SIX2Q9NPC8 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SIX2Q9NPC8 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.27■■□□□ 1
SIX2Q9NPC8 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.27■■□□□ 1
SIX2Q9NPC8 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.27■■□□□ 1
SIX2Q9NPC8 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SIX2Q9NPC8 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.27■■□□□ 1
SIX2Q9NPC8 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.27■■□□□ 1
SIX2Q9NPC8 AC083880.1-201ENST00000608266 535 ntBASIC21.27■■□□□ 1
SIX2Q9NPC8 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
SIX2Q9NPC8 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SIX2Q9NPC8 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SIX2Q9NPC8 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.26■□□□□ 0.99
SIX2Q9NPC8 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.26■□□□□ 0.99
SIX2Q9NPC8 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SIX2Q9NPC8 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.26■□□□□ 0.99
SIX2Q9NPC8 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.26■□□□□ 0.99
SIX2Q9NPC8 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SIX2Q9NPC8 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.26■□□□□ 0.99
SIX2Q9NPC8 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.26■□□□□ 0.99
SIX2Q9NPC8 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.26■□□□□ 0.99
SIX2Q9NPC8 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.26■□□□□ 0.99
SIX2Q9NPC8 MIR4758-201ENST00000577688 71 ntBASIC21.26■□□□□ 0.99
SIX2Q9NPC8 AC006557.6-201ENST00000623071 864 ntBASIC21.26■□□□□ 0.99
SIX2Q9NPC8 AC124283.5-201ENST00000624661 1809 ntBASIC21.26■□□□□ 0.99
SIX2Q9NPC8 TFP1-202ENST00000475455 1573 ntBASIC21.26■□□□□ 0.99
SIX2Q9NPC8 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX2Q9NPC8 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.24■□□□□ 0.99
SIX2Q9NPC8 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
SIX2Q9NPC8 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms