Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPAS3Q8IXF0 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPAS3Q8IXF0 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPAS3Q8IXF0 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPAS3Q8IXF0 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPAS3Q8IXF0 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
NPAS3Q8IXF0 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.56■□□□□ 0.88
NPAS3Q8IXF0 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS3Q8IXF0 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 B3GAT3P1-201ENST00000471720 806 ntBASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 TFP1-202ENST00000475455 1573 ntBASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 PKD1P6-201ENST00000343738 4769 ntBASIC20.54■□□□□ 0.88
NPAS3Q8IXF0 AF106564.1-201ENST00000607058 2553 ntBASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 YBX1P10-201ENST00000444752 975 ntBASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 AP005242.2-201ENST00000580065 1175 ntBASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS3Q8IXF0 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 AC011506.1-201ENST00000474329 610 ntBASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 DUX4L26-201ENST00000489078 1255 ntBASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 KRT18P16-201ENST00000510337 1294 ntBASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 AC010203.1-204ENST00000548782 407 ntBASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 DGCR10-201ENST00000609839 495 ntBASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPAS3Q8IXF0 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.87
NPAS3Q8IXF0 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.52■□□□□ 0.87
NPAS3Q8IXF0 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
NPAS3Q8IXF0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
NPAS3Q8IXF0 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPAS3Q8IXF0 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPAS3Q8IXF0 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPAS3Q8IXF0 AC018553.1-201ENST00000616682 1458 ntBASIC20.51■□□□□ 0.87
NPAS3Q8IXF0 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPAS3Q8IXF0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.51■□□□□ 0.87
NPAS3Q8IXF0 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
NPAS3Q8IXF0 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.51■□□□□ 0.87
NPAS3Q8IXF0 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms