Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.81■■□□□ 1.08
CLCN3P51790 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLCN3P51790 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.81■■□□□ 1.08
CLCN3P51790 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLCN3P51790 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CLCN3P51790 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLCN3P51790 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLCN3P51790 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.81■■□□□ 1.08
CLCN3P51790 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLCN3P51790 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.81■■□□□ 1.08
CLCN3P51790 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
CLCN3P51790 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC21.81■■□□□ 1.08
CLCN3P51790 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.81■■□□□ 1.08
CLCN3P51790 AP003071.4-201ENST00000562276 1284 ntBASIC21.81■■□□□ 1.08
CLCN3P51790 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.81■■□□□ 1.08
CLCN3P51790 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.81■■□□□ 1.08
CLCN3P51790 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.81■■□□□ 1.08
CLCN3P51790 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLCN3P51790 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLCN3P51790 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.81■■□□□ 1.08
CLCN3P51790 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.81■■□□□ 1.08
CLCN3P51790 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.81■■□□□ 1.08
CLCN3P51790 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLCN3P51790 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
CLCN3P51790 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.8■■□□□ 1.08
CLCN3P51790 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.8■■□□□ 1.08
CLCN3P51790 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.8■■□□□ 1.08
CLCN3P51790 ECEL1P3-201ENST00000427961 737 ntBASIC21.8■■□□□ 1.08
CLCN3P51790 AL355355.2-201ENST00000442321 338 ntBASIC21.8■■□□□ 1.08
CLCN3P51790 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CLCN3P51790 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLCN3P51790 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.8■■□□□ 1.08
CLCN3P51790 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLCN3P51790 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLCN3P51790 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLCN3P51790 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLCN3P51790 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLCN3P51790 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLCN3P51790 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLCN3P51790 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
CLCN3P51790 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLCN3P51790 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
CLCN3P51790 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLCN3P51790 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
CLCN3P51790 AL512408.1-201ENST00000569378 2000 ntBASIC21.79■■□□□ 1.08
CLCN3P51790 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLCN3P51790 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CLCN3P51790 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLCN3P51790 AC211429.1-201ENST00000415277 523 ntBASIC21.79■■□□□ 1.08
CLCN3P51790 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLCN3P51790 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.79■■□□□ 1.08
CLCN3P51790 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.79■■□□□ 1.08
CLCN3P51790 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.79■■□□□ 1.08
CLCN3P51790 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.79■■□□□ 1.08
CLCN3P51790 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.79■■□□□ 1.08
CLCN3P51790 AL353708.3-201ENST00000610272 989 ntBASIC21.79■■□□□ 1.08
CLCN3P51790 AP005212.1-201ENST00000581547 1997 ntBASIC21.79■■□□□ 1.08
CLCN3P51790 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLCN3P51790 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLCN3P51790 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLCN3P51790 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CLCN3P51790 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLCN3P51790 NIFKP9-201ENST00000419265 221 ntBASIC21.78■■□□□ 1.08
CLCN3P51790 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CLCN3P51790 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CLCN3P51790 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.78■■□□□ 1.08
CLCN3P51790 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.78■■□□□ 1.08
CLCN3P51790 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CLCN3P51790 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
CLCN3P51790 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.78■■□□□ 1.08
CLCN3P51790 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CLCN3P51790 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLCN3P51790 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.78■■□□□ 1.08
CLCN3P51790 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.78■■□□□ 1.08
CLCN3P51790 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
CLCN3P51790 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLCN3P51790 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLCN3P51790 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CLCN3P51790 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLCN3P51790 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.77■■□□□ 1.08
CLCN3P51790 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLCN3P51790 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CLCN3P51790 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CLCN3P51790 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLCN3P51790 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLCN3P51790 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLCN3P51790 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CLCN3P51790 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.77■■□□□ 1.08
CLCN3P51790 YBX1P10-201ENST00000444752 975 ntBASIC21.77■■□□□ 1.08
CLCN3P51790 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLCN3P51790 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.77■■□□□ 1.08
CLCN3P51790 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
CLCN3P51790 C1QL1P1-201ENST00000568105 661 ntBASIC21.77■■□□□ 1.08
CLCN3P51790 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.77■■□□□ 1.08
CLCN3P51790 CR392000.1-201ENST00000624770 1228 ntBASIC21.77■■□□□ 1.08
CLCN3P51790 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLCN3P51790 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLCN3P51790 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLCN3P51790 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
CLCN3P51790 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms