Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.47■□□□□ 0.39
SGCEO43556 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SGCEO43556 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 AL691432.2-201ENST00000607222 2038 ntBASIC17.47■□□□□ 0.39
SGCEO43556 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 GUSBP6-202ENST00000438529 1198 ntBASIC17.47■□□□□ 0.39
SGCEO43556 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.47■□□□□ 0.39
SGCEO43556 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.47■□□□□ 0.39
SGCEO43556 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.47■□□□□ 0.39
SGCEO43556 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.47■□□□□ 0.39
SGCEO43556 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.47■□□□□ 0.39
SGCEO43556 AC092118.2-201ENST00000613495 667 ntBASIC17.47■□□□□ 0.39
SGCEO43556 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.47■□□□□ 0.39
SGCEO43556 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SGCEO43556 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.47■□□□□ 0.39
SGCEO43556 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.47■□□□□ 0.39
SGCEO43556 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.47■□□□□ 0.39
SGCEO43556 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SGCEO43556 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.47■□□□□ 0.39
SGCEO43556 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
SGCEO43556 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
SGCEO43556 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
SGCEO43556 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SGCEO43556 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SGCEO43556 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SGCEO43556 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.46■□□□□ 0.39
SGCEO43556 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SGCEO43556 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SGCEO43556 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SGCEO43556 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SGCEO43556 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SGCEO43556 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SGCEO43556 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SGCEO43556 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.46■□□□□ 0.39
SGCEO43556 DUSP5P2-201ENST00000426873 1033 ntBASIC17.46■□□□□ 0.39
SGCEO43556 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.46■□□□□ 0.39
SGCEO43556 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
SGCEO43556 AC090192.1-201ENST00000517740 490 ntBASIC17.46■□□□□ 0.39
SGCEO43556 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.46■□□□□ 0.39
SGCEO43556 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.46■□□□□ 0.39
SGCEO43556 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.46■□□□□ 0.39
SGCEO43556 MIR4758-201ENST00000577688 71 ntBASIC17.46■□□□□ 0.39
SGCEO43556 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.46■□□□□ 0.39
SGCEO43556 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.46■□□□□ 0.39
SGCEO43556 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.46■□□□□ 0.39
SGCEO43556 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
SGCEO43556 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.46■□□□□ 0.39
SGCEO43556 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SGCEO43556 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SGCEO43556 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SGCEO43556 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
SGCEO43556 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SGCEO43556 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.45■□□□□ 0.38
SGCEO43556 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.45■□□□□ 0.38
SGCEO43556 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SGCEO43556 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.45■□□□□ 0.38
SGCEO43556 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
SGCEO43556 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.45■□□□□ 0.38
SGCEO43556 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.45■□□□□ 0.38
SGCEO43556 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.45■□□□□ 0.38
SGCEO43556 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.45■□□□□ 0.38
SGCEO43556 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.45■□□□□ 0.38
SGCEO43556 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.45■□□□□ 0.38
SGCEO43556 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SGCEO43556 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.45■□□□□ 0.38
SGCEO43556 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SGCEO43556 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
SGCEO43556 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.44■□□□□ 0.38
SGCEO43556 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SGCEO43556 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms