Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RNU4-21P-201ENST00000362802 126 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 OR2AK2-201ENST00000366480 1154 ntAPPRIS ALT2 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 OR10R2-201ENST00000368152 1008 ntAPPRIS P2 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 CARD17-201ENST00000375707 466 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RNU1-11P-201ENST00000383975 164 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RNU6-1320P-201ENST00000390838 107 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RNU6-1269P-201ENST00000391139 107 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AL161909.1-201ENST00000397390 712 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 DEFB108C-201ENST00000400154 252 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 DNAJC5G-202ENST00000402462 1904 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 SLC2A11-205ENST00000403208 564 ntTSL 4 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RN7SKP168-201ENST00000410910 300 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC022028.1-201ENST00000412054 408 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC002367.1-201ENST00000416765 405 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC020983.1-201ENST00000417063 543 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 IPPKP1-201ENST00000422501 768 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 GH2-202ENST00000423893 819 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RANP5-201ENST00000427731 655 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AL022331.1-201ENST00000429025 477 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 XRCC6P5-201ENST00000435236 1795 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RPS25P9-201ENST00000435591 252 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 PPIAP17-201ENST00000438507 471 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC012494.1-201ENST00000439259 1103 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 IGBP1P3-201ENST00000447449 1000 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 LINC01961-201ENST00000449954 745 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 C15orf40-202ENST00000451195 518 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 OR6C5P-201ENST00000452388 923 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 DBIL5P-202ENST00000453414 250 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 ATP5A1P1-201ENST00000454088 1321 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 GH2-204ENST00000456543 794 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RNU6-599P-201ENST00000459383 107 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RNU6-1193P-201ENST00000459461 107 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RN7SL496P-201ENST00000470372 290 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 ZBTB20-AS4-201ENST00000472323 675 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AL035404.1-201ENST00000497982 568 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 MARCH6-204ENST00000503788 2874 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 Z99943.2-201ENST00000507585 266 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 ATP1B1P1-201ENST00000509767 915 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RIPOR2-205ENST00000510784 3381 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC079140.3-201ENST00000511111 550 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC145138.1-201ENST00000512908 2851 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 PART1-203ENST00000515734 2569 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 LINC01091-204ENST00000515769 2204 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 IGKV3D-31-201ENST00000519131 281 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 IGLVIV-59-201ENST00000520218 250 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC084251.1-201ENST00000521867 382 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 CA1-215ENST00000522389 551 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 IGKV2OR22-4-201ENST00000523309 367 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 KCTD21-AS1-204ENST00000528468 554 ntTSL 4 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RERGL-202ENST00000536890 367 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 TMEM132D-AS1-204ENST00000537367 531 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 LINC02407-202ENST00000553247 1083 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 EEF1A1P2-201ENST00000553854 1447 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 ZHX3-218ENST00000560364 4283 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 DNM1P33-201ENST00000565222 270 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC009171.1-201ENST00000572673 266 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RN7SL123P-201ENST00000577239 292 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC069061.2-201ENST00000580686 480 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AP005139.1-201ENST00000580702 1647 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 MIR4801-201ENST00000582704 82 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 ABBA01006766.1-201ENST00000584728 294 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 ZNF567-204ENST00000588311 2042 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 LINC01198-208ENST00000599175 560 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 EDRF1-AS1-205ENST00000601363 712 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AL390838.2-201ENST00000602394 274 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 CGA-202ENST00000610310 615 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 DLEU2_1.1-201ENST00000612089 120 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC020904.2-202ENST00000614660 1401 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 DLEU2_1.2-201ENST00000614667 120 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 MMACHC-203ENST00000616135 1510 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 TGIF1-223ENST00000618001 3030 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RNU6-368P-201ENST00000620928 107 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 RNU6-538P-201ENST00000622329 107 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC021106.3-201ENST00000623925 531 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 LINC01359-205ENST00000634604 1050 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 Metazoa_SRP.212-201ENST00000636778 248 ntBASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms