Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC6.81□□□□□ -1.32
HDAC4P56524 RPL19P11-201ENST00000495944 589 ntBASIC6.81□□□□□ -1.32
HDAC4P56524 AC092349.1-201ENST00000504903 310 ntBASIC6.81□□□□□ -1.32
HDAC4P56524 AC093870.1-201ENST00000506837 213 ntBASIC6.81□□□□□ -1.32
HDAC4P56524 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC6.81□□□□□ -1.32
HDAC4P56524 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC6.81□□□□□ -1.32
HDAC4P56524 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
HDAC4P56524 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC6.81□□□□□ -1.32
HDAC4P56524 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC6.81□□□□□ -1.32
HDAC4P56524 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC6.81□□□□□ -1.32
HDAC4P56524 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
HDAC4P56524 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
HDAC4P56524 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.81□□□□□ -1.32
HDAC4P56524 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.81□□□□□ -1.32
HDAC4P56524 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
HDAC4P56524 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
HDAC4P56524 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.81□□□□□ -1.32
HDAC4P56524 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.81□□□□□ -1.32
HDAC4P56524 AC079248.1-201ENST00000427568 1546 ntBASIC6.81□□□□□ -1.32
HDAC4P56524 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
HDAC4P56524 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
HDAC4P56524 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.8□□□□□ -1.32
HDAC4P56524 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.8□□□□□ -1.32
HDAC4P56524 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 NALCN-202ENST00000376200 1126 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 MIR551B-201ENST00000384984 96 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 SNORA11.3-201ENST00000408471 128 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 RNA5SP155-201ENST00000411154 129 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 RPL23AP85-201ENST00000421838 433 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 AL589794.1-201ENST00000424971 390 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 PARP4P1-201ENST00000435945 2337 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.8□□□□□ -1.32
HDAC4P56524 AL356121.1-201ENST00000442911 156 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 AL020997.1-201ENST00000446554 349 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC6.8□□□□□ -1.32
HDAC4P56524 PPIAP32-201ENST00000449940 472 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.8□□□□□ -1.32
HDAC4P56524 NPM1P27-201ENST00000502784 830 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC6.8□□□□□ -1.32
HDAC4P56524 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC6.8□□□□□ -1.32
HDAC4P56524 AC008676.3-201ENST00000521237 435 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 AC084851.2-201ENST00000530377 364 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 OR9G2P-201ENST00000533326 880 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.8□□□□□ -1.32
HDAC4P56524 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC6.8□□□□□ -1.32
HDAC4P56524 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC6.8□□□□□ -1.32
HDAC4P56524 HMGN1P26-201ENST00000558737 303 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.8□□□□□ -1.32
HDAC4P56524 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC6.8□□□□□ -1.32
HDAC4P56524 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
HDAC4P56524 RN7SL208P-201ENST00000577964 296 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC6.8□□□□□ -1.32
HDAC4P56524 AC036176.3-201ENST00000602456 418 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 AL049840.6-201ENST00000604583 345 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 AC018690.1-201ENST00000608144 626 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 AL008582.1-201ENST00000609612 442 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 IGKV2OR2-10-201ENST00000613976 311 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 SNORA11.6-201ENST00000619030 128 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 MRPL57P1-201ENST00000621486 265 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC6.8□□□□□ -1.32
HDAC4P56524 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.8□□□□□ -1.32
HDAC4P56524 AL121936.2-201ENST00000641935 662 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.8□□□□□ -1.32
HDAC4P56524 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.8□□□□□ -1.32
HDAC4P56524 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDAC4P56524 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.8□□□□□ -1.32
HDAC4P56524 AC140479.2-201ENST00000421567 3130 ntBASIC6.8□□□□□ -1.32
HDAC4P56524 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.8□□□□□ -1.32
HDAC4P56524 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
HDAC4P56524 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HDAC4P56524 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC6.79□□□□□ -1.32
HDAC4P56524 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.79□□□□□ -1.32
HDAC4P56524 AC067942.1-201ENST00000488045 1493 ntBASIC6.79□□□□□ -1.32
HDAC4P56524 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HDAC4P56524 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
HDAC4P56524 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HDAC4P56524 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC6.79□□□□□ -1.32
HDAC4P56524 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HDAC4P56524 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC6.79□□□□□ -1.32
HDAC4P56524 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HDAC4P56524 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC6.79□□□□□ -1.32
HDAC4P56524 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
HDAC4P56524 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC6.79□□□□□ -1.32
HDAC4P56524 PPP2R2DP1-201ENST00000420526 637 ntBASIC6.79□□□□□ -1.32
HDAC4P56524 AC244033.1-201ENST00000426826 870 ntBASIC6.79□□□□□ -1.32
HDAC4P56524 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.79□□□□□ -1.32
HDAC4P56524 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HDAC4P56524 RPS7P11-201ENST00000484240 586 ntBASIC6.79□□□□□ -1.32
HDAC4P56524 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms