Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC7.68□□□□□ -1.18
COL5A3P25940 LINC02250-201ENST00000422117 2491 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
COL5A3P25940 ATP8B1-201ENST00000283684 5818 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL5A3P25940 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL5A3P25940 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL5A3P25940 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL5A3P25940 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL5A3P25940 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC7.68□□□□□ -1.18
COL5A3P25940 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
COL5A3P25940 AC009237.1-201ENST00000442127 744 ntBASIC7.68□□□□□ -1.18
COL5A3P25940 RPL23AP60-201ENST00000450011 454 ntBASIC7.68□□□□□ -1.18
COL5A3P25940 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC7.68□□□□□ -1.18
COL5A3P25940 RN7SL72P-201ENST00000460697 269 ntBASIC7.68□□□□□ -1.18
COL5A3P25940 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC7.68□□□□□ -1.18
COL5A3P25940 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC7.68□□□□□ -1.18
COL5A3P25940 CASP5-209ENST00000531367 879 ntTSL 5 BASIC7.68□□□□□ -1.18
COL5A3P25940 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC7.68□□□□□ -1.18
COL5A3P25940 AC097467.4-201ENST00000605504 141 ntBASIC7.68□□□□□ -1.18
COL5A3P25940 OFD1P17-201ENST00000437639 3018 ntBASIC7.68□□□□□ -1.18
COL5A3P25940 ERCC6-201ENST00000355832 8008 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL5A3P25940 C11orf63-203ENST00000531316 2782 ntAPPRIS P1 TSL 2 BASIC7.68□□□□□ -1.18
COL5A3P25940 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL5A3P25940 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
COL5A3P25940 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL5A3P25940 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL5A3P25940 AC127024.8-201ENST00000623719 2094 ntBASIC7.68□□□□□ -1.18
COL5A3P25940 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
COL5A3P25940 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL5A3P25940 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL5A3P25940 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC7.67□□□□□ -1.18
COL5A3P25940 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL5A3P25940 RNA5SP394-201ENST00000364216 119 ntBASIC7.67□□□□□ -1.18
COL5A3P25940 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC7.67□□□□□ -1.18
COL5A3P25940 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC7.67□□□□□ -1.18
COL5A3P25940 AC126120.1-201ENST00000431082 470 ntBASIC7.67□□□□□ -1.18
COL5A3P25940 AL445928.1-201ENST00000435545 222 ntBASIC7.67□□□□□ -1.18
COL5A3P25940 RPS27AP3-201ENST00000453803 454 ntBASIC7.67□□□□□ -1.18
COL5A3P25940 AC007386.1-201ENST00000455212 582 ntBASIC7.67□□□□□ -1.18
COL5A3P25940 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL5A3P25940 WBP1LP3-201ENST00000523033 208 ntBASIC7.67□□□□□ -1.18
COL5A3P25940 uc_338.26-201ENST00000612659 160 ntBASIC7.67□□□□□ -1.18
COL5A3P25940 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC7.67□□□□□ -1.18
COL5A3P25940 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
COL5A3P25940 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC7.67□□□□□ -1.18
COL5A3P25940 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC7.67□□□□□ -1.18
COL5A3P25940 AC092692.1-201ENST00000623625 2595 ntBASIC7.67□□□□□ -1.18
COL5A3P25940 ZNF100-202ENST00000358296 5745 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
COL5A3P25940 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
COL5A3P25940 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
COL5A3P25940 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC7.67□□□□□ -1.18
COL5A3P25940 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC7.67□□□□□ -1.18
COL5A3P25940 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL5A3P25940 AC105235.1-201ENST00000623208 1816 ntBASIC7.67□□□□□ -1.18
COL5A3P25940 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC7.67□□□□□ -1.18
COL5A3P25940 KIRREL1-203ENST00000368172 6870 ntTSL 2 BASIC7.67□□□□□ -1.18
COL5A3P25940 MPPED2-201ENST00000358117 2405 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL5A3P25940 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC7.67□□□□□ -1.18
COL5A3P25940 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC7.67□□□□□ -1.18
COL5A3P25940 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL5A3P25940 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
COL5A3P25940 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
COL5A3P25940 RNA5SP375-201ENST00000362975 119 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 CAV1-204ENST00000393470 598 ntTSL 4 BASIC7.66□□□□□ -1.18
COL5A3P25940 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC7.66□□□□□ -1.18
COL5A3P25940 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC7.66□□□□□ -1.18
COL5A3P25940 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC7.66□□□□□ -1.18
COL5A3P25940 CUBNP2-201ENST00000443534 1139 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 RPS3AP15-201ENST00000483874 781 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 EIF3LP3-201ENST00000495197 822 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 GAPDHP71-201ENST00000511530 1003 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC7.66□□□□□ -1.18
COL5A3P25940 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC7.66□□□□□ -1.18
COL5A3P25940 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC7.66□□□□□ -1.18
COL5A3P25940 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC7.66□□□□□ -1.18
COL5A3P25940 AC020978.8-201ENST00000571975 3022 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 ATP5G3-201ENST00000284727 5484 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 AC013488.1-201ENST00000526618 1838 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 PAX6-209ENST00000419022 6888 ntAPPRIS P4 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
COL5A3P25940 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
COL5A3P25940 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC7.66□□□□□ -1.18
COL5A3P25940 CCNT2P1-201ENST00000423082 1315 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 AC117409.1-201ENST00000470499 1310 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
COL5A3P25940 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC7.66□□□□□ -1.18
COL5A3P25940 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 FGD6-201ENST00000343958 9288 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 BX322650.1-201ENST00000332359 2143 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 SORBS2-201ENST00000284776 5996 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
COL5A3P25940 OR2W4P-201ENST00000406496 926 ntBASIC7.66□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms