Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC6.94□□□□□ -1.3
USP39Q53GS9 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.94□□□□□ -1.3
USP39Q53GS9 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC6.94□□□□□ -1.3
USP39Q53GS9 BNIP3P24-201ENST00000593398 557 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC6.94□□□□□ -1.3
USP39Q53GS9 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC6.94□□□□□ -1.3
USP39Q53GS9 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 AC092683.1-202ENST00000620023 754 ntTSL 3 BASIC6.94□□□□□ -1.3
USP39Q53GS9 AC159540.2-201ENST00000621110 754 ntTSL 3 BASIC6.94□□□□□ -1.3
USP39Q53GS9 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
USP39Q53GS9 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 LRRC37A4P-201ENST00000579913 3243 ntTSL 2 BASIC6.94□□□□□ -1.3
USP39Q53GS9 AC015871.3-201ENST00000618835 2261 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
USP39Q53GS9 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.3
USP39Q53GS9 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 AL034417.4-202ENST00000642135 2236 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC6.93□□□□□ -1.3
USP39Q53GS9 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC6.93□□□□□ -1.3
USP39Q53GS9 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC6.93□□□□□ -1.3
USP39Q53GS9 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 AC092821.2-201ENST00000545710 2042 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.93□□□□□ -1.3
USP39Q53GS9 AC104162.1-201ENST00000430831 2382 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC6.93□□□□□ -1.3
USP39Q53GS9 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.93□□□□□ -1.3
USP39Q53GS9 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 GMFG-201ENST00000253054 616 ntTSL 5 BASIC6.93□□□□□ -1.3
USP39Q53GS9 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 RNU4-23P-201ENST00000362839 140 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 ANAPC10P1-201ENST00000395991 556 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 VIM2P-201ENST00000402383 1294 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 MIR1275-201ENST00000408770 80 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.93□□□□□ -1.3
USP39Q53GS9 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC6.93□□□□□ -1.3
USP39Q53GS9 MTND2P16-201ENST00000419987 799 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC6.93□□□□□ -1.3
USP39Q53GS9 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC6.93□□□□□ -1.3
USP39Q53GS9 AC092634.2-201ENST00000428146 1010 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 OR6R1P-201ENST00000431838 940 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 AL645939.3-201ENST00000435408 225 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC6.93□□□□□ -1.3
USP39Q53GS9 RPSAP40-201ENST00000442343 891 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC6.93□□□□□ -1.3
USP39Q53GS9 PRDX1P1-201ENST00000449329 596 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC6.93□□□□□ -1.3
USP39Q53GS9 AC016724.1-201ENST00000453215 421 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC6.93□□□□□ -1.3
USP39Q53GS9 EIF2S2P4-201ENST00000461070 984 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 RN7SL216P-201ENST00000471607 298 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 ABCA11P-202ENST00000504019 2110 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 AC118465.1-201ENST00000513820 1271 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 MAST4-IT1-201ENST00000514241 658 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC6.93□□□□□ -1.3
USP39Q53GS9 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC6.93□□□□□ -1.3
USP39Q53GS9 AC011853.1-201ENST00000518911 454 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 IGKV2-4-201ENST00000523070 340 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 NDUFA5P11-201ENST00000567995 343 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 MIR3135A-201ENST00000578460 77 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 AC013444.2-201ENST00000603317 787 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 AL445435.1-201ENST00000604232 665 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 AL499605.1-201ENST00000604628 403 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 PPATP2-201ENST00000605635 508 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.93□□□□□ -1.3
USP39Q53GS9 AC183089.2-201ENST00000637931 916 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 AL121936.2-201ENST00000641935 662 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 AC107980.1-201ENST00000558671 3355 ntBASIC6.93□□□□□ -1.3
USP39Q53GS9 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
USP39Q53GS9 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC6.92□□□□□ -1.3
USP39Q53GS9 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
USP39Q53GS9 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
USP39Q53GS9 MAPK10-241ENST00000639234 2985 ntTSL 5 BASIC6.92□□□□□ -1.3
USP39Q53GS9 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC6.92□□□□□ -1.3
USP39Q53GS9 AP000641.1-201ENST00000531988 1639 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
USP39Q53GS9 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
USP39Q53GS9 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
USP39Q53GS9 MIR199B-201ENST00000384849 110 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.92□□□□□ -1.3
USP39Q53GS9 PTCD2P2-201ENST00000415579 1095 ntBASIC6.92□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms