Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC6.97□□□□□ -1.29
USP39Q53GS9 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 AC090771.1-201ENST00000585803 1618 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.97□□□□□ -1.29
USP39Q53GS9 FBXL21-201ENST00000297158 1305 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC6.97□□□□□ -1.29
USP39Q53GS9 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.29
USP39Q53GS9 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.96□□□□□ -1.29
USP39Q53GS9 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
USP39Q53GS9 FTO-203ENST00000460382 1517 ntTSL 5 BASIC6.96□□□□□ -1.29
USP39Q53GS9 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
USP39Q53GS9 ADAL-202ENST00000422466 3767 ntTSL 5 BASIC6.96□□□□□ -1.29
USP39Q53GS9 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
USP39Q53GS9 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.29
USP39Q53GS9 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
USP39Q53GS9 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
USP39Q53GS9 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.96□□□□□ -1.3
USP39Q53GS9 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC6.96□□□□□ -1.3
USP39Q53GS9 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC6.96□□□□□ -1.3
USP39Q53GS9 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 RNA5SP232-201ENST00000364144 119 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
USP39Q53GS9 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
USP39Q53GS9 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
USP39Q53GS9 MIR1282-201ENST00000408865 101 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 RN7SKP86-201ENST00000410454 332 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 AC009506.2-201ENST00000420635 840 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AC008753.1-201ENST00000423096 284 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC6.96□□□□□ -1.3
USP39Q53GS9 GSTA6P-201ENST00000424144 582 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC6.96□□□□□ -1.3
USP39Q53GS9 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC6.96□□□□□ -1.3
USP39Q53GS9 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC6.96□□□□□ -1.3
USP39Q53GS9 AC093166.3-201ENST00000448785 303 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 AL390728.3-201ENST00000452704 270 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 RPL34P34-201ENST00000465389 354 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AC092902.1-201ENST00000486999 259 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AC016550.1-201ENST00000505348 785 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 MTND3P24-201ENST00000506306 329 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 GUSBP9-201ENST00000510138 584 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC6.96□□□□□ -1.3
USP39Q53GS9 RNA5SP278-201ENST00000517055 102 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC6.96□□□□□ -1.3
USP39Q53GS9 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 AC009729.1-201ENST00000548873 1133 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 DPPA3P2-201ENST00000553589 478 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC6.96□□□□□ -1.3
USP39Q53GS9 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC6.96□□□□□ -1.3
USP39Q53GS9 AC010463.3-201ENST00000594077 500 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 WBP1LP12-201ENST00000604449 331 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC6.96□□□□□ -1.3
USP39Q53GS9 uc_338.29-201ENST00000615099 168 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 U6.48-201ENST00000618523 106 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 MIR6861-201ENST00000618657 64 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AL445984.1-201ENST00000637834 659 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC6.96□□□□□ -1.3
USP39Q53GS9 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
USP39Q53GS9 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 AC061975.7-201ENST00000592016 2692 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.3
USP39Q53GS9 SEC23IP-208ENST00000543134 1461 ntTSL 5 BASIC6.96□□□□□ -1.3
USP39Q53GS9 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 NCOA4P3-201ENST00000513203 1877 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 SPATA31B1P-201ENST00000434692 4016 ntBASIC6.96□□□□□ -1.3
USP39Q53GS9 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.96□□□□□ -1.3
USP39Q53GS9 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
USP39Q53GS9 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.3
USP39Q53GS9 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
USP39Q53GS9 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
USP39Q53GS9 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
USP39Q53GS9 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
USP39Q53GS9 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC6.95□□□□□ -1.3
USP39Q53GS9 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms