Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC6.08□□□□□ -1.44
SOX3P41225 TVP23CP1-201ENST00000450317 639 ntBASIC6.08□□□□□ -1.44
SOX3P41225 RPL29P23-201ENST00000486188 442 ntBASIC6.08□□□□□ -1.44
SOX3P41225 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.08□□□□□ -1.44
SOX3P41225 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
SOX3P41225 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC6.08□□□□□ -1.44
SOX3P41225 AC111000.5-201ENST00000506559 1178 ntBASIC6.08□□□□□ -1.44
SOX3P41225 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC6.08□□□□□ -1.44
SOX3P41225 AP001000.1-201ENST00000526843 742 ntBASIC6.08□□□□□ -1.44
SOX3P41225 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC6.08□□□□□ -1.44
SOX3P41225 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC6.08□□□□□ -1.44
SOX3P41225 AC025283.1-201ENST00000572039 734 ntBASIC6.08□□□□□ -1.44
SOX3P41225 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC6.08□□□□□ -1.44
SOX3P41225 AL049840.6-202ENST00000603373 279 ntBASIC6.08□□□□□ -1.44
SOX3P41225 NDUFB9P1-201ENST00000604683 510 ntBASIC6.08□□□□□ -1.44
SOX3P41225 AC005277.2-201ENST00000617898 390 ntBASIC6.08□□□□□ -1.44
SOX3P41225 AC089999.3-201ENST00000622440 577 ntBASIC6.08□□□□□ -1.44
SOX3P41225 AC018692.2-201ENST00000624130 348 ntBASIC6.08□□□□□ -1.44
SOX3P41225 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC6.08□□□□□ -1.44
SOX3P41225 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SOX3P41225 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SOX3P41225 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.08□□□□□ -1.44
SOX3P41225 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
SOX3P41225 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SOX3P41225 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
SOX3P41225 SYT14P1-202ENST00000600441 1448 ntBASIC6.08□□□□□ -1.44
SOX3P41225 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SOX3P41225 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SOX3P41225 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.07□□□□□ -1.44
SOX3P41225 NR1H5P-201ENST00000452683 1377 ntBASIC6.07□□□□□ -1.44
SOX3P41225 AKAP17BP-201ENST00000431706 2719 ntBASIC6.07□□□□□ -1.44
SOX3P41225 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SOX3P41225 GLYATL1P1-201ENST00000528297 1607 ntBASIC6.07□□□□□ -1.44
SOX3P41225 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
SOX3P41225 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
SOX3P41225 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
SOX3P41225 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.07□□□□□ -1.44
SOX3P41225 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC6.07□□□□□ -1.44
SOX3P41225 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
SOX3P41225 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
SOX3P41225 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
SOX3P41225 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
SOX3P41225 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SOX3P41225 SNORA70H-201ENST00000383910 135 ntBASIC6.07□□□□□ -1.44
SOX3P41225 SNORA70J-201ENST00000384182 135 ntBASIC6.07□□□□□ -1.44
SOX3P41225 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC6.07□□□□□ -1.44
SOX3P41225 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.07□□□□□ -1.44
SOX3P41225 LINC00328-2P-201ENST00000436585 219 ntBASIC6.07□□□□□ -1.44
SOX3P41225 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC6.07□□□□□ -1.44
SOX3P41225 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC6.07□□□□□ -1.44
SOX3P41225 AC098818.1-201ENST00000478593 252 ntBASIC6.07□□□□□ -1.44
SOX3P41225 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC6.07□□□□□ -1.44
SOX3P41225 AC008429.2-201ENST00000523057 864 ntBASIC6.07□□□□□ -1.44
SOX3P41225 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC6.07□□□□□ -1.44
SOX3P41225 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC6.07□□□□□ -1.44
SOX3P41225 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC6.07□□□□□ -1.44
SOX3P41225 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC6.07□□□□□ -1.44
SOX3P41225 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.07□□□□□ -1.44
SOX3P41225 AC012368.3-201ENST00000604190 219 ntBASIC6.07□□□□□ -1.44
SOX3P41225 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC6.07□□□□□ -1.44
SOX3P41225 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.07□□□□□ -1.44
SOX3P41225 AC004836.1-201ENST00000623032 634 ntBASIC6.07□□□□□ -1.44
SOX3P41225 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC6.07□□□□□ -1.44
SOX3P41225 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.07□□□□□ -1.44
SOX3P41225 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
SOX3P41225 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SOX3P41225 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6.07□□□□□ -1.44
SOX3P41225 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SOX3P41225 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
SOX3P41225 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.07□□□□□ -1.44
SOX3P41225 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
SOX3P41225 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SOX3P41225 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SOX3P41225 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SOX3P41225 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
SOX3P41225 AP004289.1-201ENST00000436307 2205 ntBASIC6.06□□□□□ -1.44
SOX3P41225 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.06□□□□□ -1.44
SOX3P41225 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.06□□□□□ -1.44
SOX3P41225 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 TINAG-202ENST00000370864 692 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 MRPS6P2-201ENST00000381143 370 ntBASIC6.06□□□□□ -1.44
SOX3P41225 AL035696.2-201ENST00000407941 709 ntBASIC6.06□□□□□ -1.44
SOX3P41225 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.06□□□□□ -1.44
SOX3P41225 RN7SKP129-201ENST00000410288 299 ntBASIC6.06□□□□□ -1.44
SOX3P41225 RN7SKP221-201ENST00000410420 301 ntBASIC6.06□□□□□ -1.44
SOX3P41225 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 AL359092.1-201ENST00000417156 265 ntBASIC6.06□□□□□ -1.44
SOX3P41225 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC6.06□□□□□ -1.44
SOX3P41225 GPN3P1-201ENST00000423883 535 ntBASIC6.06□□□□□ -1.44
SOX3P41225 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms