Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 BMS1P11-201ENST00000442351 885 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 PPIAP32-201ENST00000449940 472 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 BMS1P9-201ENST00000457640 885 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 RN7SL149P-201ENST00000465197 281 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 RPL7AP23-201ENST00000482625 776 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 TECRP2-201ENST00000503270 928 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC093895.1-201ENST00000506480 821 ntTSL 3 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 RPL7L1P7-201ENST00000509986 724 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC010442.1-201ENST00000515583 816 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 PVT1-214ENST00000522875 922 ntTSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC130366.1-201ENST00000526505 1192 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 SNRPCP6-201ENST00000528310 210 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 LINC01146-206ENST00000556684 361 ntTSL 3 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AL132640.1-201ENST00000559594 619 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC091304.4-201ENST00000565703 620 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AL078623.1-201ENST00000602702 907 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 MIR6070-201ENST00000613967 103 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC005858.3-201ENST00000624756 589 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC099654.15-201ENST00000639802 509 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 HSPD1P1-201ENST00000503199 1726 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC006511.3-201ENST00000624929 1783 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 BTK-209ENST00000618050 2417 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 RN7SKP118-201ENST00000364331 330 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 RNA5SP474-201ENST00000391234 90 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 RNU1-56P-201ENST00000391303 164 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 IL20-203ENST00000391930 1153 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC240504.1-201ENST00000395709 845 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AL672212.1-201ENST00000422246 400 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 Z68868.1-201ENST00000429048 544 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 OR5AC1-201ENST00000429239 925 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 UBE2V2P3-201ENST00000433562 437 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AL159174.1-201ENST00000438267 811 ntTSL 3 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AL354872.1-201ENST00000456361 967 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC236972.4-201ENST00000458091 963 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC083906.1-201ENST00000509298 406 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC091849.1-201ENST00000509920 121 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 MRPS5P3-201ENST00000515577 166 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 RNU6-551P-201ENST00000516661 103 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 SUMO2P19-201ENST00000518920 295 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AL121579.2-201ENST00000555466 590 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 RN7SL426P-201ENST00000579106 295 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 Z99289.1-201ENST00000585373 807 ntTSL 3 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AL049840.5-201ENST00000602827 552 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC245407.2-201ENST00000614199 451 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 AMYH02020865.1-207ENST00000617096 458 ntTSL 3 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AL157762.1-201ENST00000619612 415 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC005753.1-201ENST00000623837 618 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AC073488.9-201ENST00000631601 754 ntBASIC5.66□□□□□ -1.5
NKX3-1Q99801 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms