Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC8.17□□□□□ -1.1
LIG1P18858 LINC00533-201ENST00000456103 537 ntTSL 3 BASIC8.17□□□□□ -1.1
LIG1P18858 RAP1BP2-201ENST00000478270 544 ntBASIC8.17□□□□□ -1.1
LIG1P18858 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC8.17□□□□□ -1.1
LIG1P18858 AC073842.2-201ENST00000494221 572 ntTSL 4 BASIC8.17□□□□□ -1.1
LIG1P18858 AC008040.4-201ENST00000494834 768 ntBASIC8.17□□□□□ -1.1
LIG1P18858 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC8.17□□□□□ -1.1
LIG1P18858 MRPL49P1-201ENST00000505951 535 ntBASIC8.17□□□□□ -1.1
LIG1P18858 OSTC-204ENST00000512478 663 ntTSL 5 BASIC8.17□□□□□ -1.1
LIG1P18858 AC021146.10-201ENST00000515628 706 ntBASIC8.17□□□□□ -1.1
LIG1P18858 AC021733.2-201ENST00000518830 497 ntBASIC8.17□□□□□ -1.1
LIG1P18858 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC8.17□□□□□ -1.1
LIG1P18858 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC8.17□□□□□ -1.1
LIG1P18858 AC018523.1-201ENST00000534211 512 ntBASIC8.17□□□□□ -1.1
LIG1P18858 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
LIG1P18858 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC8.17□□□□□ -1.1
LIG1P18858 CRADD-210ENST00000552033 622 ntTSL 3 BASIC8.17□□□□□ -1.1
LIG1P18858 AC009097.3-201ENST00000563557 1018 ntBASIC8.17□□□□□ -1.1
LIG1P18858 AC091304.5-201ENST00000568969 158 ntBASIC8.17□□□□□ -1.1
LIG1P18858 LINC00469-203ENST00000579749 583 ntTSL 5 BASIC8.17□□□□□ -1.1
LIG1P18858 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC8.17□□□□□ -1.1
LIG1P18858 AL160237.3-201ENST00000604114 1013 ntBASIC8.17□□□□□ -1.1
LIG1P18858 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC8.17□□□□□ -1.1
LIG1P18858 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC8.17□□□□□ -1.1
LIG1P18858 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC8.17□□□□□ -1.1
LIG1P18858 MIR3974-201ENST00000637126 96 ntBASIC8.17□□□□□ -1.1
LIG1P18858 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
LIG1P18858 MROH3P-201ENST00000435735 2676 ntBASIC8.17□□□□□ -1.1
LIG1P18858 MTND4P8-201ENST00000514997 1362 ntBASIC8.17□□□□□ -1.1
LIG1P18858 AC096656.1-201ENST00000623826 1364 ntBASIC8.17□□□□□ -1.1
LIG1P18858 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
LIG1P18858 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
LIG1P18858 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
LIG1P18858 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC8.17□□□□□ -1.1
LIG1P18858 ANGPT1-206ENST00000520734 1526 ntTSL 2 BASIC8.17□□□□□ -1.1
LIG1P18858 CASC19-243ENST00000641588 1546 ntBASIC8.17□□□□□ -1.1
LIG1P18858 AC016251.2-201ENST00000623393 3089 ntBASIC8.17□□□□□ -1.1
LIG1P18858 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC8.17□□□□□ -1.1
LIG1P18858 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
LIG1P18858 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC8.17□□□□□ -1.1
LIG1P18858 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
LIG1P18858 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC8.17□□□□□ -1.1
LIG1P18858 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
LIG1P18858 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
LIG1P18858 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
LIG1P18858 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
LIG1P18858 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC8.17□□□□□ -1.1
LIG1P18858 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC8.17□□□□□ -1.1
LIG1P18858 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC8.17□□□□□ -1.1
LIG1P18858 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
LIG1P18858 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.1
LIG1P18858 PDE4D-210ENST00000503258 2860 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LIG1P18858 AC110597.1-201ENST00000562669 3176 ntBASIC8.16□□□□□ -1.1
LIG1P18858 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LIG1P18858 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC8.16□□□□□ -1.1
LIG1P18858 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LIG1P18858 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LIG1P18858 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LIG1P18858 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LIG1P18858 RNU6-618P-201ENST00000363518 112 ntBASIC8.16□□□□□ -1.1
LIG1P18858 RN7SKP107-201ENST00000364157 290 ntBASIC8.16□□□□□ -1.1
LIG1P18858 ARMCX7P-201ENST00000372828 562 ntBASIC8.16□□□□□ -1.1
LIG1P18858 RNU6-1055P-201ENST00000391085 107 ntBASIC8.16□□□□□ -1.1
LIG1P18858 AL590762.1-201ENST00000391782 432 ntBASIC8.16□□□□□ -1.1
LIG1P18858 NPM1P38-201ENST00000403835 865 ntBASIC8.16□□□□□ -1.1
LIG1P18858 AC017035.1-201ENST00000411999 1115 ntBASIC8.16□□□□□ -1.1
LIG1P18858 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC8.16□□□□□ -1.1
LIG1P18858 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC8.16□□□□□ -1.1
LIG1P18858 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LIG1P18858 DHFRP2-201ENST00000414224 547 ntBASIC8.16□□□□□ -1.1
LIG1P18858 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC8.16□□□□□ -1.1
LIG1P18858 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC8.16□□□□□ -1.1
LIG1P18858 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LIG1P18858 NIP7P1-201ENST00000433227 512 ntBASIC8.16□□□□□ -1.1
LIG1P18858 AC105052.2-201ENST00000434317 794 ntBASIC8.16□□□□□ -1.1
LIG1P18858 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC8.16□□□□□ -1.1
LIG1P18858 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC8.16□□□□□ -1.1
LIG1P18858 RPL5P27-201ENST00000437011 881 ntBASIC8.16□□□□□ -1.1
LIG1P18858 AC005808.1-201ENST00000444112 381 ntTSL 2 BASIC8.16□□□□□ -1.1
LIG1P18858 RPL7P33-201ENST00000444159 742 ntBASIC8.16□□□□□ -1.1
LIG1P18858 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LIG1P18858 RN7SL259P-201ENST00000478499 253 ntBASIC8.16□□□□□ -1.1
LIG1P18858 RPS4XP23-201ENST00000487801 237 ntBASIC8.16□□□□□ -1.1
LIG1P18858 CYB5A-204ENST00000494131 776 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LIG1P18858 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC8.16□□□□□ -1.1
LIG1P18858 SUMO2P5-201ENST00000506790 245 ntBASIC8.16□□□□□ -1.1
LIG1P18858 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC8.16□□□□□ -1.1
LIG1P18858 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC8.16□□□□□ -1.1
LIG1P18858 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC8.16□□□□□ -1.1
LIG1P18858 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LIG1P18858 AC087257.2-201ENST00000538759 928 ntBASIC8.16□□□□□ -1.1
LIG1P18858 DCP1B-205ENST00000540622 1547 ntTSL 5 BASIC8.16□□□□□ -1.1
LIG1P18858 GLRXP2-201ENST00000555594 321 ntBASIC8.16□□□□□ -1.1
LIG1P18858 EEF1A1P22-201ENST00000559385 1380 ntBASIC8.16□□□□□ -1.1
LIG1P18858 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC8.16□□□□□ -1.1
LIG1P18858 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC8.16□□□□□ -1.1
LIG1P18858 LINC00906-202ENST00000587998 648 ntTSL 3 BASIC8.16□□□□□ -1.1
LIG1P18858 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC8.16□□□□□ -1.1
LIG1P18858 AL589765.5-201ENST00000596133 515 ntBASIC8.16□□□□□ -1.1
LIG1P18858 ZNF431-206ENST00000599296 586 ntTSL 5 BASIC8.16□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms