Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 NEK2P2-201ENST00000438441 1338 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 MAPK10-287ENST00000641217 3037 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 AC126474.2-201ENST00000623268 1750 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 OR2A3P-202ENST00000641249 1776 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 AC012358.1-201ENST00000366153 916 ntTSL 3 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 AL451142.1-201ENST00000375867 775 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 AC097721.1-201ENST00000427150 1253 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 LINC00687-201ENST00000427835 558 ntTSL 3 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 AL354893.1-201ENST00000433735 348 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 RPL7AP71-201ENST00000451120 739 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 CCNJP2-201ENST00000457810 1163 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 AC126615.1-201ENST00000470084 630 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 RN7SL390P-201ENST00000470634 284 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 RN7SL868P-201ENST00000485915 303 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 DCAF13P2-201ENST00000514188 555 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 IGLC4-201ENST00000517690 248 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 AC068408.1-201ENST00000577406 1144 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 MIR378H-201ENST00000579966 83 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 BUB1P1-201ENST00000603541 607 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 AL365259.1-201ENST00000606334 509 ntTSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 AC020658.4-201ENST00000613987 684 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 DAPL1-204ENST00000621326 671 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 AC012254.5-201ENST00000623573 478 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 RPS27L-208ENST00000635699 693 ntTSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 AC006453.3-201ENST00000635891 377 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 MIPEPP2-201ENST00000422560 1819 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 CR383656.5-201ENST00000547616 1340 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 MAPK10-357ENST00000641831 2858 ntBASIC5.68□□□□□ -1.5
NKX3-1Q99801 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
NKX3-1Q99801 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
NKX3-1Q99801 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC007159.1-201ENST00000566529 4706 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 GLYATL1P1-201ENST00000528297 1607 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 FAM32BP-201ENST00000344033 333 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 OR10D1P-201ENST00000355343 936 ntBASIC5.67□□□□□ -1.5
NKX3-1Q99801 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NKX3-1Q99801 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.67□□□□□ -1.5
NKX3-1Q99801 AC009237.1-201ENST00000442127 744 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms