Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.34□□□□□ -1.39
HOXC4P09017 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
HOXC4P09017 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
HOXC4P09017 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
HOXC4P09017 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.34□□□□□ -1.39
HOXC4P09017 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.4
HOXC4P09017 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC6.34□□□□□ -1.4
HOXC4P09017 AC097634.1-201ENST00000604491 2467 ntBASIC6.34□□□□□ -1.4
HOXC4P09017 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
HOXC4P09017 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC6.34□□□□□ -1.4
HOXC4P09017 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.34□□□□□ -1.4
HOXC4P09017 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
HOXC4P09017 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC4P09017 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.33□□□□□ -1.4
HOXC4P09017 AC009120.2-204ENST00000621548 2032 ntBASIC6.33□□□□□ -1.4
HOXC4P09017 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC4P09017 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
HOXC4P09017 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC4P09017 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC4P09017 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC6.33□□□□□ -1.4
HOXC4P09017 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC4P09017 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC4P09017 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC6.33□□□□□ -1.4
HOXC4P09017 RPL11P4-201ENST00000332269 436 ntBASIC6.33□□□□□ -1.4
HOXC4P09017 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.33□□□□□ -1.4
HOXC4P09017 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.33□□□□□ -1.4
HOXC4P09017 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.33□□□□□ -1.4
HOXC4P09017 MGAT2P1-201ENST00000449718 797 ntBASIC6.33□□□□□ -1.4
HOXC4P09017 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.33□□□□□ -1.4
HOXC4P09017 SETP4-201ENST00000455717 868 ntBASIC6.33□□□□□ -1.4
HOXC4P09017 AC021006.1-201ENST00000489849 553 ntBASIC6.33□□□□□ -1.4
HOXC4P09017 RN7SL104P-201ENST00000498686 293 ntBASIC6.33□□□□□ -1.4
HOXC4P09017 AC096754.1-201ENST00000508904 818 ntBASIC6.33□□□□□ -1.4
HOXC4P09017 AC108103.1-201ENST00000511286 446 ntBASIC6.33□□□□□ -1.4
HOXC4P09017 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6.33□□□□□ -1.4
HOXC4P09017 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC6.33□□□□□ -1.4
HOXC4P09017 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC6.33□□□□□ -1.4
HOXC4P09017 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC6.33□□□□□ -1.4
HOXC4P09017 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.33□□□□□ -1.4
HOXC4P09017 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.33□□□□□ -1.4
HOXC4P09017 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.33□□□□□ -1.4
HOXC4P09017 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
HOXC4P09017 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
HOXC4P09017 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC6.33□□□□□ -1.4
HOXC4P09017 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC4P09017 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.33□□□□□ -1.4
HOXC4P09017 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.33□□□□□ -1.4
HOXC4P09017 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
HOXC4P09017 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC4P09017 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC4P09017 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC4P09017 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
HOXC4P09017 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
HOXC4P09017 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.32□□□□□ -1.4
HOXC4P09017 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 SNX18P3-202ENST00000565670 1750 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 AC005332.9-201ENST00000620266 2921 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
HOXC4P09017 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 AL157702.1-201ENST00000398764 426 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC4P09017 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC4P09017 AL035422.1-201ENST00000414193 397 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 MTND2P12-201ENST00000417560 1252 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 OSBPL10-AS1-203ENST00000428872 538 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC4P09017 AC108479.1-201ENST00000431142 427 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC4P09017 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC4P09017 AC094019.1-201ENST00000434678 472 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 PMS2P9-201ENST00000441237 515 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 RARRES2P3-201ENST00000457739 473 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 AC092824.1-201ENST00000483524 576 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 AC022415.1-202ENST00000486612 523 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 RN7SL170P-201ENST00000487098 295 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC4P09017 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC6.32□□□□□ -1.4
HOXC4P09017 AC106800.3-201ENST00000511389 308 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 ZNF519P4-201ENST00000514008 125 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 IGKV1D-22-201ENST00000518953 324 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 AC084337.1-201ENST00000524809 686 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 AP000662.1-201ENST00000530952 487 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 AC084121.1-201ENST00000533882 835 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC4P09017 AL845552.1-201ENST00000556820 323 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
HOXC4P09017 RN7SL475P-201ENST00000583379 298 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC6.32□□□□□ -1.4
HOXC4P09017 APOC2-205ENST00000592257 444 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC4P09017 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC6.32□□□□□ -1.4
HOXC4P09017 AC073862.4-201ENST00000622982 854 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms