Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4CQ96CF2 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4CQ96CF2 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.12
CHMP4CQ96CF2 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC8.02□□□□□ -1.12
CHMP4CQ96CF2 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 WBP11P1-201ENST00000562560 1931 ntBASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 OR7A2P-201ENST00000304105 930 ntBASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 RNA5SP308-201ENST00000362532 115 ntBASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 RGS5-202ENST00000367903 934 ntTSL 3 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 RN7SKP91-201ENST00000410852 288 ntBASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 RNA5SP155-201ENST00000411154 129 ntBASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 FAM183DP-201ENST00000421987 399 ntBASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 MTCYBP14-201ENST00000457471 715 ntBASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 RPS3AP49-201ENST00000472161 790 ntBASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 AC010998.3-201ENST00000613871 631 ntBASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 MAPK10-383ENST00000642032 3390 ntBASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4CQ96CF2 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC010132.4-201ENST00000569883 1368 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 DHFRP5-201ENST00000406944 564 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 SUMO2P8-201ENST00000434672 286 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 WDR82P2-201ENST00000444540 928 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AL121578.2-201ENST00000448797 447 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 RPL5P33-201ENST00000487833 905 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC021146.11-201ENST00000503319 491 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AP005902.2-201ENST00000518393 307 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC027667.1-201ENST00000545814 304 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 DAPL1-204ENST00000621326 671 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AC091948.2-201ENST00000636510 279 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AL591848.4-201ENST00000567832 3472 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AP003486.1-201ENST00000525716 3994 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AL451064.2-201ENST00000623514 1654 ntBASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4CQ96CF2 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC8□□□□□ -1.13
CHMP4CQ96CF2 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
CHMP4CQ96CF2 AC105114.1-201ENST00000624795 1862 ntBASIC8□□□□□ -1.13
CHMP4CQ96CF2 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC8□□□□□ -1.13
CHMP4CQ96CF2 IAPP-205ENST00000542023 2015 ntTSL 2 BASIC8□□□□□ -1.13
CHMP4CQ96CF2 COG2-209ENST00000534989 2963 ntTSL 2 BASIC8□□□□□ -1.13
CHMP4CQ96CF2 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC8□□□□□ -1.13
CHMP4CQ96CF2 RNA5SP333-201ENST00000363466 118 ntBASIC8□□□□□ -1.13
CHMP4CQ96CF2 RNA5SP334-201ENST00000364825 118 ntBASIC8□□□□□ -1.13
CHMP4CQ96CF2 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC8□□□□□ -1.13
CHMP4CQ96CF2 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC8□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms