Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC2□□□□□ -2.09
SYNE1Q8NF91 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC2□□□□□ -2.09
SYNE1Q8NF91 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 AL096712.1-201ENST00000614561 159 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 AL354718.1-201ENST00000619764 589 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 CD2-202ENST00000369478 1609 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 FYB1-210ENST00000515010 2578 ntAPPRIS P3 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 OR51A10P-201ENST00000307165 937 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 MIR188-201ENST00000385034 86 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 RPSAP32-201ENST00000432681 526 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 AC114781.3-201ENST00000512083 142 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC2□□□□□ -2.09
SYNE1Q8NF91 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC2□□□□□ -2.09
SYNE1Q8NF91 AC092718.4-201ENST00000566639 716 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 AC090826.1-203ENST00000569235 490 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 AL589743.6-201ENST00000611025 117 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 RPSAP68-201ENST00000625020 438 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC2□□□□□ -2.09
SYNE1Q8NF91 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC2□□□□□ -2.09
SYNE1Q8NF91 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC2□□□□□ -2.09
SYNE1Q8NF91 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 ZNF812P-201ENST00000457674 1694 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 LMO3-208ENST00000441439 3515 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 AC008938.1-201ENST00000566929 6510 ntTSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 TMSB4XP2-201ENST00000335179 210 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 SNORA51.1-201ENST00000363243 140 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 GCNT1P4-201ENST00000404096 329 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 RBMY3AP-201ENST00000449381 1145 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 AC096922.1-201ENST00000461635 651 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 B3GNTL1P1-201ENST00000509174 289 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC2□□□□□ -2.09
SYNE1Q8NF91 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC2□□□□□ -2.09
SYNE1Q8NF91 LINC02270-202ENST00000515691 541 ntTSL 3 BASIC2□□□□□ -2.09
SYNE1Q8NF91 RNA5SP441-201ENST00000516809 88 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 C8orf34-208ENST00000523686 1948 ntAPPRIS ALT2 TSL 2 BASIC2□□□□□ -2.09
SYNE1Q8NF91 CLEC7A-208ENST00000525605 573 ntTSL 4 BASIC2□□□□□ -2.09
SYNE1Q8NF91 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC2□□□□□ -2.09
SYNE1Q8NF91 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 CASC19-246ENST00000641625 1606 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC2□□□□□ -2.09
SYNE1Q8NF91 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 AC066692.1-201ENST00000421721 457 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC2□□□□□ -2.09
SYNE1Q8NF91 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC2□□□□□ -2.09
SYNE1Q8NF91 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC2□□□□□ -2.09
SYNE1Q8NF91 GAPDHP16-201ENST00000448152 962 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 PSMA2P2-201ENST00000504319 686 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 ODF1-202ENST00000518835 368 ntTSL 3 BASIC2□□□□□ -2.09
SYNE1Q8NF91 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC2□□□□□ -2.09
SYNE1Q8NF91 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC2□□□□□ -2.09
SYNE1Q8NF91 AP001264.1-201ENST00000620602 703 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 AC025262.3-201ENST00000623666 360 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC2□□□□□ -2.09
SYNE1Q8NF91 AC008957.3-201ENST00000624112 2242 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 ZNF667-208ENST00000629654 3265 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 HSPD1P9-201ENST00000420325 1636 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC2□□□□□ -2.09
SYNE1Q8NF91 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC2□□□□□ -2.09
SYNE1Q8NF91 PRELID1P2-201ENST00000407805 396 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 C2orf76-203ENST00000409523 747 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SYNE1Q8NF91 CDY17P-201ENST00000414121 1282 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC2□□□□□ -2.09
SYNE1Q8NF91 RPL26P30-201ENST00000453533 435 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 RN7SL177P-201ENST00000476596 299 ntBASIC2□□□□□ -2.09
SYNE1Q8NF91 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms