Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX3P41225 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC6.13□□□□□ -1.43
SOX3P41225 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 AL022323.4-201ENST00000623980 13120 ntBASIC6.13□□□□□ -1.43
SOX3P41225 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX3P41225 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 PPIAP24-201ENST00000328558 471 ntBASIC6.13□□□□□ -1.43
SOX3P41225 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 RNA5SP85-201ENST00000365378 119 ntBASIC6.13□□□□□ -1.43
SOX3P41225 U3.52-201ENST00000384034 216 ntBASIC6.13□□□□□ -1.43
SOX3P41225 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
SOX3P41225 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.13□□□□□ -1.43
SOX3P41225 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC6.13□□□□□ -1.43
SOX3P41225 TRGV5P-201ENST00000419915 354 ntBASIC6.13□□□□□ -1.43
SOX3P41225 AC245452.2-201ENST00000435222 392 ntBASIC6.13□□□□□ -1.43
SOX3P41225 AC128677.1-201ENST00000436016 442 ntBASIC6.13□□□□□ -1.43
SOX3P41225 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC6.13□□□□□ -1.43
SOX3P41225 GAPDHP33-201ENST00000443168 1013 ntBASIC6.13□□□□□ -1.43
SOX3P41225 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.13□□□□□ -1.43
SOX3P41225 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC6.13□□□□□ -1.43
SOX3P41225 AC012158.1-202ENST00000482431 1132 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 RPL17P2-201ENST00000491913 451 ntBASIC6.13□□□□□ -1.43
SOX3P41225 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 RPL12P7-201ENST00000493832 494 ntBASIC6.13□□□□□ -1.43
SOX3P41225 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.13□□□□□ -1.43
SOX3P41225 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 TBCA-209ENST00000522370 435 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX3P41225 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX3P41225 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX3P41225 BMS1P16-201ENST00000556075 1147 ntBASIC6.13□□□□□ -1.43
SOX3P41225 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX3P41225 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX3P41225 AC007066.2-202ENST00000566531 914 ntBASIC6.13□□□□□ -1.43
SOX3P41225 AC138207.8-204ENST00000579588 527 ntBASIC6.13□□□□□ -1.43
SOX3P41225 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX3P41225 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX3P41225 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX3P41225 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX3P41225 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX3P41225 AC091193.1-201ENST00000604640 448 ntBASIC6.13□□□□□ -1.43
SOX3P41225 AC068726.1-201ENST00000610993 341 ntBASIC6.13□□□□□ -1.43
SOX3P41225 GAPDHP41-201ENST00000613707 975 ntBASIC6.13□□□□□ -1.43
SOX3P41225 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.13□□□□□ -1.43
SOX3P41225 AL354718.1-201ENST00000619764 589 ntBASIC6.13□□□□□ -1.43
SOX3P41225 MIR7854-201ENST00000620068 65 ntBASIC6.13□□□□□ -1.43
SOX3P41225 AP000577.1-201ENST00000624366 878 ntBASIC6.13□□□□□ -1.43
SOX3P41225 RACK1-235ENST00000626067 564 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX3P41225 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX3P41225 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 LRRC37A15P-201ENST00000514785 1355 ntBASIC6.13□□□□□ -1.43
SOX3P41225 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
SOX3P41225 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
SOX3P41225 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 AL353753.1-201ENST00000612217 2320 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX3P41225 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.12□□□□□ -1.43
SOX3P41225 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.12□□□□□ -1.43
SOX3P41225 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
SOX3P41225 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
SOX3P41225 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 SNORA64.3-201ENST00000365647 134 ntBASIC6.12□□□□□ -1.43
SOX3P41225 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 GGA1-205ENST00000405147 575 ntTSL 4 BASIC6.12□□□□□ -1.43
SOX3P41225 RN7SKP38-201ENST00000410782 309 ntBASIC6.12□□□□□ -1.43
SOX3P41225 RANP6-201ENST00000413691 644 ntBASIC6.12□□□□□ -1.43
SOX3P41225 AC096537.2-201ENST00000413707 714 ntBASIC6.12□□□□□ -1.43
SOX3P41225 SMARCE1P1-201ENST00000417747 1186 ntBASIC6.12□□□□□ -1.43
SOX3P41225 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC6.12□□□□□ -1.43
SOX3P41225 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC6.12□□□□□ -1.43
SOX3P41225 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 AC096632.2-201ENST00000438139 1239 ntBASIC6.12□□□□□ -1.43
SOX3P41225 AC245291.3-201ENST00000443400 292 ntBASIC6.12□□□□□ -1.43
SOX3P41225 MTCO1P46-201ENST00000451639 1491 ntBASIC6.12□□□□□ -1.43
SOX3P41225 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 RBMY2HP-201ENST00000457961 720 ntBASIC6.12□□□□□ -1.43
SOX3P41225 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
SOX3P41225 AK6-203ENST00000502819 743 ntTSL 5 BASIC6.12□□□□□ -1.43
SOX3P41225 SNORA58-201ENST00000505219 137 ntBASIC6.12□□□□□ -1.43
SOX3P41225 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC6.12□□□□□ -1.43
SOX3P41225 TMCC1P1-201ENST00000518897 1980 ntBASIC6.12□□□□□ -1.43
SOX3P41225 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC6.12□□□□□ -1.43
SOX3P41225 PVT1-214ENST00000522875 922 ntTSL 5 BASIC6.12□□□□□ -1.43
SOX3P41225 KCTD9P4-201ENST00000526766 1166 ntBASIC6.12□□□□□ -1.43
SOX3P41225 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms