Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX2P35548 OR5AH1P-201ENST00000595968 283 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AL583859.2-202ENST00000602311 505 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 AL450336.1-201ENST00000605180 586 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AL512413.1-201ENST00000606489 382 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AC025171.4-201ENST00000607250 1047 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AC245008.1-201ENST00000608123 476 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AL590560.2-201ENST00000608430 732 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AC097641.3-201ENST00000613523 464 ntBASIC6.61□□□□□ -1.35
MSX2P35548 Metazoa_SRP.39-201ENST00000614194 271 ntBASIC6.61□□□□□ -1.35
MSX2P35548 BX005195.1-201ENST00000618097 1198 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AL355480.4-201ENST00000626823 69 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AC016582.3-206ENST00000636547 207 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AC011471.4-201ENST00000638271 216 ntBASIC6.61□□□□□ -1.35
MSX2P35548 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
MSX2P35548 AC013488.1-201ENST00000526618 1838 ntBASIC6.61□□□□□ -1.35
MSX2P35548 GNRH1-201ENST00000276414 1760 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX2P35548 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX2P35548 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 CA10-204ENST00000570565 2276 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX2P35548 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX2P35548 AL136298.2-201ENST00000556497 1570 ntBASIC6.61□□□□□ -1.35
MSX2P35548 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX2P35548 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.6□□□□□ -1.35
MSX2P35548 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX2P35548 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC6.6□□□□□ -1.35
MSX2P35548 AC092979.1-201ENST00000488190 1414 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 TFDP2-222ENST00000495310 1442 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
MSX2P35548 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX2P35548 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 BROX-209ENST00000612948 4028 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 AP002800.1-201ENST00000624982 2225 ntBASIC6.6□□□□□ -1.35
MSX2P35548 AC007278.1-201ENST00000450893 1327 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX2P35548 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 ZNF29P-201ENST00000225587 168 ntBASIC6.6□□□□□ -1.35
MSX2P35548 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
MSX2P35548 SNORA73B-201ENST00000363217 204 ntBASIC6.6□□□□□ -1.35
MSX2P35548 NR1I3-203ENST00000367981 1076 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
MSX2P35548 AC113608.1-201ENST00000398740 305 ntBASIC6.6□□□□□ -1.35
MSX2P35548 AL592310.1-201ENST00000414330 671 ntBASIC6.6□□□□□ -1.35
MSX2P35548 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 MORF4L1P6-201ENST00000418771 268 ntBASIC6.6□□□□□ -1.35
MSX2P35548 RPL6P2-201ENST00000425480 783 ntBASIC6.6□□□□□ -1.35
MSX2P35548 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX2P35548 MTCO1P51-201ENST00000427672 1060 ntBASIC6.6□□□□□ -1.35
MSX2P35548 MYO5BP3-201ENST00000431872 1279 ntBASIC6.6□□□□□ -1.35
MSX2P35548 AC079781.1-201ENST00000441505 394 ntBASIC6.6□□□□□ -1.35
MSX2P35548 EIF2S2P2-201ENST00000447161 982 ntBASIC6.6□□□□□ -1.35
MSX2P35548 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX2P35548 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 OR6C72P-201ENST00000451403 892 ntBASIC6.6□□□□□ -1.35
MSX2P35548 TPTE2P5-203ENST00000458118 728 ntBASIC6.6□□□□□ -1.35
MSX2P35548 RPS18P13-201ENST00000461260 454 ntBASIC6.6□□□□□ -1.35
MSX2P35548 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC6.6□□□□□ -1.35
MSX2P35548 AC068647.2-202ENST00000485020 390 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX2P35548 RN7SL423P-201ENST00000486202 304 ntBASIC6.6□□□□□ -1.35
MSX2P35548 AC025180.1-201ENST00000505701 595 ntTSL 4 BASIC6.6□□□□□ -1.35
MSX2P35548 AC134698.1-201ENST00000511619 643 ntBASIC6.6□□□□□ -1.35
MSX2P35548 LINC02223-203ENST00000514771 781 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX2P35548 AC132192.1-201ENST00000531111 597 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX2P35548 CASP5-209ENST00000531367 879 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX2P35548 AC011611.6-201ENST00000547483 255 ntBASIC6.6□□□□□ -1.35
MSX2P35548 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX2P35548 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX2P35548 RD3L-201ENST00000557640 1201 ntAPPRIS P1 TSL 3 BASIC6.6□□□□□ -1.35
MSX2P35548 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX2P35548 AC145350.1-201ENST00000567426 208 ntBASIC6.6□□□□□ -1.35
MSX2P35548 RN7SL42P-201ENST00000579786 294 ntBASIC6.6□□□□□ -1.35
MSX2P35548 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX2P35548 MIR663AHG-213ENST00000596767 837 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX2P35548 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX2P35548 Z94722.1-201ENST00000604328 474 ntBASIC6.6□□□□□ -1.35
MSX2P35548 AC084036.1-201ENST00000609190 508 ntBASIC6.6□□□□□ -1.35
MSX2P35548 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC6.6□□□□□ -1.35
MSX2P35548 AL354733.2-202ENST00000615485 742 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX2P35548 AC004801.6-201ENST00000616571 978 ntBASIC6.6□□□□□ -1.35
MSX2P35548 CYCSP41-201ENST00000616920 296 ntBASIC6.6□□□□□ -1.35
MSX2P35548 LINC00216-201ENST00000623548 1126 ntBASIC6.6□□□□□ -1.35
MSX2P35548 AC120057.5-201ENST00000623840 154 ntBASIC6.6□□□□□ -1.35
MSX2P35548 AL049541.1-201ENST00000630976 642 ntTSL 2 BASIC6.6□□□□□ -1.35
MSX2P35548 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
MSX2P35548 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.6□□□□□ -1.35
MSX2P35548 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
MSX2P35548 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
MSX2P35548 MRPS31-201ENST00000323563 1462 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSX2P35548 ZNF502-201ENST00000296091 3270 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms