Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 ODF3-202ENST00000342593 386 ntTSL 5 BASIC6.08□□□□□ -1.44
HOXD4P09016 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 CYCSP17-201ENST00000407870 315 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 CYP4F32P-201ENST00000426492 504 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 PAICSP2-201ENST00000429118 1150 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC6.08□□□□□ -1.44
HOXD4P09016 ATP6V1G1P4-201ENST00000438388 335 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 AC234771.2-201ENST00000445718 597 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 LAPTM4BP1-201ENST00000447781 690 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 TVP23CP1-201ENST00000450317 639 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 BZW1P1-201ENST00000454901 1240 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.08□□□□□ -1.44
HOXD4P09016 AC099340.1-201ENST00000475247 599 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 RPS14P8-201ENST00000478778 369 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 RPS4XP23-201ENST00000487801 237 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 AL390198.2-201ENST00000510553 222 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC6.08□□□□□ -1.44
HOXD4P09016 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC6.08□□□□□ -1.44
HOXD4P09016 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.08□□□□□ -1.44
HOXD4P09016 EEF1A1P17-201ENST00000547505 1275 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC6.08□□□□□ -1.44
HOXD4P09016 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
HOXD4P09016 ULK4P1-202ENST00000565174 503 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 RN7SL199P-201ENST00000578752 281 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 RN7SL656P-201ENST00000579044 281 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.08□□□□□ -1.44
HOXD4P09016 RN7SL404P-201ENST00000582421 281 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 AC091133.5-201ENST00000603088 301 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 AC009237.12-201ENST00000604755 742 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 MIR6778-201ENST00000617912 73 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 AC073862.4-201ENST00000622982 854 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 AC027559.1-201ENST00000636288 271 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 AC130360.2-201ENST00000533477 1556 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
HOXD4P09016 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.08□□□□□ -1.44
HOXD4P09016 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.08□□□□□ -1.44
HOXD4P09016 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.08□□□□□ -1.44
HOXD4P09016 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.08□□□□□ -1.44
HOXD4P09016 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 AL451064.2-201ENST00000623514 1654 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 AC022905.1-201ENST00000503430 3048 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
HOXD4P09016 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 RNA5SP321-201ENST00000362722 111 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
HOXD4P09016 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.07□□□□□ -1.44
HOXD4P09016 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
HOXD4P09016 RN7SKP86-201ENST00000410454 332 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.07□□□□□ -1.44
HOXD4P09016 GAPDHP37-201ENST00000442317 968 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 UBBP5-201ENST00000446970 266 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.07□□□□□ -1.44
HOXD4P09016 VNN3-210ENST00000450865 596 ntTSL 4 BASIC6.07□□□□□ -1.44
HOXD4P09016 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC6.07□□□□□ -1.44
HOXD4P09016 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
HOXD4P09016 GUSBP9-201ENST00000510138 584 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC6.07□□□□□ -1.44
HOXD4P09016 AC100768.2-201ENST00000534068 683 ntTSL 3 BASIC6.07□□□□□ -1.44
HOXD4P09016 AC007068.2-201ENST00000543168 395 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
HOXD4P09016 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.07□□□□□ -1.44
HOXD4P09016 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 MIR3154-201ENST00000577829 84 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC6.07□□□□□ -1.44
HOXD4P09016 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC6.07□□□□□ -1.44
HOXD4P09016 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 AL031658.2-201ENST00000616850 651 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 AP001885.1-201ENST00000621658 558 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 AL683826.1-201ENST00000624104 627 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 AC016542.2-201ENST00000624201 619 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 AC183089.2-201ENST00000637931 916 ntBASIC6.07□□□□□ -1.44
HOXD4P09016 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms