Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC10.58□□□□□ -0.72
CUX1P39880 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
CUX1P39880 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CUX1P39880 AC092681.3-201ENST00000609463 678 ntBASIC10.58□□□□□ -0.72
CUX1P39880 AC096708.4-201ENST00000620563 552 ntBASIC10.58□□□□□ -0.72
CUX1P39880 AL049767.1-202ENST00000637826 242 ntBASIC10.58□□□□□ -0.72
CUX1P39880 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CUX1P39880 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
CUX1P39880 AC010624.4-201ENST00000597606 1351 ntBASIC10.57□□□□□ -0.72
CUX1P39880 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CUX1P39880 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
CUX1P39880 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX1P39880 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC10.57□□□□□ -0.72
CUX1P39880 BTN3A3-201ENST00000244519 3002 ntAPPRIS P4 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX1P39880 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX1P39880 CREB3L2-201ENST00000330387 7412 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX1P39880 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC10.57□□□□□ -0.72
CUX1P39880 ARHGAP19-202ENST00000358531 5463 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX1P39880 PLAGL1-202ENST00000360537 4430 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
CUX1P39880 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC10.57□□□□□ -0.72
CUX1P39880 AC093155.2-201ENST00000420734 937 ntBASIC10.57□□□□□ -0.72
CUX1P39880 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC10.57□□□□□ -0.72
CUX1P39880 FTLP8-201ENST00000446770 267 ntBASIC10.57□□□□□ -0.72
CUX1P39880 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC10.57□□□□□ -0.72
CUX1P39880 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC10.57□□□□□ -0.72
CUX1P39880 IGLV3-6-201ENST00000523937 250 ntBASIC10.57□□□□□ -0.72
CUX1P39880 AC233702.7-202ENST00000582941 211 ntBASIC10.57□□□□□ -0.72
CUX1P39880 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX1P39880 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
CUX1P39880 AC062022.1-201ENST00000451026 1684 ntBASIC10.56□□□□□ -0.72
CUX1P39880 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
CUX1P39880 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC10.56□□□□□ -0.72
CUX1P39880 NTRK3-212ENST00000558676 4670 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
CUX1P39880 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC10.56□□□□□ -0.72
CUX1P39880 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC10.56□□□□□ -0.72
CUX1P39880 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC10.56□□□□□ -0.72
CUX1P39880 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC10.56□□□□□ -0.72
CUX1P39880 SNORA58B-201ENST00000364259 136 ntBASIC10.56□□□□□ -0.72
CUX1P39880 GTF3AP1-201ENST00000416942 1004 ntBASIC10.56□□□□□ -0.72
CUX1P39880 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC10.56□□□□□ -0.72
CUX1P39880 AL355607.1-201ENST00000427745 295 ntTSL 3 BASIC10.56□□□□□ -0.72
CUX1P39880 AC064862.4-201ENST00000442180 334 ntBASIC10.56□□□□□ -0.72
CUX1P39880 AL512593.1-201ENST00000444758 779 ntBASIC10.56□□□□□ -0.72
CUX1P39880 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC10.56□□□□□ -0.72
CUX1P39880 AC027229.1-201ENST00000583887 253 ntBASIC10.56□□□□□ -0.72
CUX1P39880 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CUX1P39880 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CUX1P39880 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC10.56□□□□□ -0.72
CUX1P39880 ERVV-1-201ENST00000602168 2202 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
CUX1P39880 AC138915.4-201ENST00000565549 4147 ntBASIC10.56□□□□□ -0.72
CUX1P39880 LRRC8B-206ENST00000640258 8034 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
CUX1P39880 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CUX1P39880 AC062029.1-202ENST00000606164 3651 ntBASIC10.56□□□□□ -0.72
CUX1P39880 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CUX1P39880 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CUX1P39880 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
CUX1P39880 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
CUX1P39880 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
CUX1P39880 PBLD-204ENST00000358769 2587 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
CUX1P39880 AC024651.2-201ENST00000562480 2098 ntBASIC10.55□□□□□ -0.72
CUX1P39880 IL13RA2-202ENST00000371936 1498 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
CUX1P39880 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
CUX1P39880 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
CUX1P39880 RNU4ATAC2P-201ENST00000408674 126 ntBASIC10.55□□□□□ -0.72
CUX1P39880 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC10.55□□□□□ -0.72
CUX1P39880 AC245096.1-201ENST00000413104 546 ntBASIC10.55□□□□□ -0.72
CUX1P39880 RPS14P4-201ENST00000415880 418 ntBASIC10.55□□□□□ -0.72
CUX1P39880 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC10.55□□□□□ -0.72
CUX1P39880 PPIAP10-201ENST00000438675 458 ntBASIC10.55□□□□□ -0.72
CUX1P39880 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
CUX1P39880 RPS27AP2-201ENST00000457576 465 ntBASIC10.55□□□□□ -0.72
CUX1P39880 RN7SL515P-201ENST00000463999 297 ntBASIC10.55□□□□□ -0.72
CUX1P39880 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC10.55□□□□□ -0.72
CUX1P39880 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC10.55□□□□□ -0.72
CUX1P39880 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC10.55□□□□□ -0.72
CUX1P39880 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC10.55□□□□□ -0.72
CUX1P39880 AL359704.2-201ENST00000604335 521 ntBASIC10.55□□□□□ -0.72
CUX1P39880 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC10.55□□□□□ -0.72
CUX1P39880 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC10.55□□□□□ -0.72
CUX1P39880 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
CUX1P39880 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
CUX1P39880 ZSWIM5P3-201ENST00000511265 2743 ntBASIC10.55□□□□□ -0.72
CUX1P39880 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
CUX1P39880 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC10.54□□□□□ -0.72
CUX1P39880 NLGN4X-204ENST00000381095 5870 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
CUX1P39880 EEF1B2P8-201ENST00000414101 671 ntBASIC10.54□□□□□ -0.72
CUX1P39880 AL713922.1-201ENST00000416477 747 ntBASIC10.54□□□□□ -0.72
CUX1P39880 ACA64.1-201ENST00000459171 127 ntBASIC10.54□□□□□ -0.72
CUX1P39880 AC109454.2-201ENST00000503470 520 ntTSL 5 BASIC10.54□□□□□ -0.72
CUX1P39880 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC10.54□□□□□ -0.72
CUX1P39880 Y_RNA.710-201ENST00000516975 110 ntBASIC10.54□□□□□ -0.72
CUX1P39880 AC016180.1-201ENST00000567945 403 ntBASIC10.54□□□□□ -0.72
CUX1P39880 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC10.54□□□□□ -0.72
CUX1P39880 RN7SL787P-201ENST00000613000 284 ntBASIC10.54□□□□□ -0.72
CUX1P39880 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC10.54□□□□□ -0.72
CUX1P39880 AC020763.5-201ENST00000623298 430 ntBASIC10.54□□□□□ -0.72
CUX1P39880 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC10.54□□□□□ -0.72
CUX1P39880 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
CUX1P39880 POLR1B-203ENST00000409894 4457 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
CUX1P39880 EIF4E3-204ENST00000425534 9949 ntAPPRIS P1 TSL 2 BASIC10.54□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms