Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS28Q9UK41 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS28Q9UK41 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS28Q9UK41 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS28Q9UK41 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS28Q9UK41 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS28Q9UK41 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS28Q9UK41 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS28Q9UK41 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
VPS28Q9UK41 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
VPS28Q9UK41 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS28Q9UK41 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS28Q9UK41 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS28Q9UK41 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
VPS28Q9UK41 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS28Q9UK41 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS28Q9UK41 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS28Q9UK41 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS28Q9UK41 AC007952.6-201ENST00000573168 2673 ntBASIC20.4■□□□□ 0.86
VPS28Q9UK41 AC003957.1-201ENST00000625108 2673 ntBASIC20.4■□□□□ 0.86
VPS28Q9UK41 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS28Q9UK41 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS28Q9UK41 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
VPS28Q9UK41 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS28Q9UK41 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
VPS28Q9UK41 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS28Q9UK41 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS28Q9UK41 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS28Q9UK41 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS28Q9UK41 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS28Q9UK41 RPPH1-201ENST00000516869 333 ntBASIC20.39■□□□□ 0.85
VPS28Q9UK41 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS28Q9UK41 MTDHP1-201ENST00000605323 784 ntBASIC20.39■□□□□ 0.85
VPS28Q9UK41 FAM197Y4-202ENST00000622692 608 ntBASIC20.39■□□□□ 0.85
VPS28Q9UK41 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS28Q9UK41 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
VPS28Q9UK41 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS28Q9UK41 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS28Q9UK41 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS28Q9UK41 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
VPS28Q9UK41 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
VPS28Q9UK41 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS28Q9UK41 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.39■□□□□ 0.85
VPS28Q9UK41 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS28Q9UK41 AP005212.1-201ENST00000581547 1997 ntBASIC20.39■□□□□ 0.85
VPS28Q9UK41 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS28Q9UK41 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS28Q9UK41 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS28Q9UK41 KRT16P6-202ENST00000425692 1426 ntBASIC20.38■□□□□ 0.85
VPS28Q9UK41 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS28Q9UK41 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
VPS28Q9UK41 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS28Q9UK41 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS28Q9UK41 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
VPS28Q9UK41 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
VPS28Q9UK41 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.38■□□□□ 0.85
VPS28Q9UK41 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS28Q9UK41 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.38■□□□□ 0.85
VPS28Q9UK41 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.38■□□□□ 0.85
VPS28Q9UK41 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.38■□□□□ 0.85
VPS28Q9UK41 AL359736.2-201ENST00000621992 437 ntBASIC20.38■□□□□ 0.85
VPS28Q9UK41 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS28Q9UK41 GABARAPL3-202ENST00000624044 1851 ntBASIC20.38■□□□□ 0.85
VPS28Q9UK41 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS28Q9UK41 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS28Q9UK41 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS28Q9UK41 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS28Q9UK41 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS28Q9UK41 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS28Q9UK41 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS28Q9UK41 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.37■□□□□ 0.85
VPS28Q9UK41 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS28Q9UK41 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
VPS28Q9UK41 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
VPS28Q9UK41 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS28Q9UK41 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS28Q9UK41 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.37■□□□□ 0.85
VPS28Q9UK41 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
VPS28Q9UK41 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS28Q9UK41 PRKY-204ENST00000533551 1019 ntBASIC20.37■□□□□ 0.85
VPS28Q9UK41 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.37■□□□□ 0.85
VPS28Q9UK41 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS28Q9UK41 AL023875.1-201ENST00000640777 796 ntBASIC20.37■□□□□ 0.85
VPS28Q9UK41 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS28Q9UK41 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS28Q9UK41 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.37■□□□□ 0.85
VPS28Q9UK41 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS28Q9UK41 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS28Q9UK41 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS28Q9UK41 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS28Q9UK41 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS28Q9UK41 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS28Q9UK41 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS28Q9UK41 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
VPS28Q9UK41 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS28Q9UK41 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS28Q9UK41 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS28Q9UK41 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.36■□□□□ 0.85
VPS28Q9UK41 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS28Q9UK41 AC239809.2-201ENST00000415381 517 ntBASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms