Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC17.06■□□□□ 0.327e-7■■□□□ 13
DDX55Q8NHQ9 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.03■□□□□ 0.327e-7■■□□□ 13
DDX55Q8NHQ9 EIF4G1-213ENST00000426123 2907 ntTSL 216.74■□□□□ 0.277e-7■■□□□ 13
DDX55Q8NHQ9 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.267e-7■■□□□ 13
DDX55Q8NHQ9 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.247e-7■■□□□ 13
DDX55Q8NHQ9 TRIP10-209ENST00000598843 469 ntTSL 216.54■□□□□ 0.247e-7■■□□□ 13
DDX55Q8NHQ9 MED16-212ENST00000607471 2004 ntTSL 1 (best)16.45■□□□□ 0.227e-7■■□□□ 13
DDX55Q8NHQ9 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.177e-7■■□□□ 13
DDX55Q8NHQ9 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.127e-7■■□□□ 13
DDX55Q8NHQ9 LAMP2-201ENST00000200639 1867 ntAPPRIS P5 TSL 1 (best) BASIC15.51■□□□□ 0.077e-7■■□□□ 13
DDX55Q8NHQ9 BSDC1-212ENST00000530485 482 ntTSL 515.38■□□□□ 0.057e-7■■□□□ 13
DDX55Q8NHQ9 BSDC1-209ENST00000526031 1361 ntTSL 2 BASIC15.27■□□□□ 0.047e-7■■□□□ 13
DDX55Q8NHQ9 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.017e-7■■□□□ 13
DDX55Q8NHQ9 EIF4G1-214ENST00000427141 730 ntTSL 514.84□□□□□ -0.037e-7■■□□□ 13
DDX55Q8NHQ9 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.067e-7■■□□□ 13
DDX55Q8NHQ9 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.117e-7■■□□□ 13
DDX55Q8NHQ9 MED16-210ENST00000606248 3181 ntTSL 1 (best)14.31□□□□□ -0.127e-7■■□□□ 13
DDX55Q8NHQ9 TAF1-207ENST00000461764 1841 ntTSL 514.17□□□□□ -0.147e-7■■□□□ 13
DDX55Q8NHQ9 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.167e-7■■□□□ 13
DDX55Q8NHQ9 BSDC1-201ENST00000341071 4599 ntTSL 2 BASIC13.85□□□□□ -0.197e-7■■□□□ 13
DDX55Q8NHQ9 MED16-204ENST00000395808 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.197e-7■■□□□ 13
DDX55Q8NHQ9 TAF1-218ENST00000485087 1738 ntTSL 513.63□□□□□ -0.237e-7■■□□□ 13
DDX55Q8NHQ9 RBP5-201ENST00000266560 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.247e-7■■□□□ 13
DDX55Q8NHQ9 EIF4G1-220ENST00000440448 578 ntTSL 413.54□□□□□ -0.247e-7■■□□□ 13
DDX55Q8NHQ9 BSDC1-206ENST00000455895 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.287e-7■■□□□ 13
DDX55Q8NHQ9 GOLGA4-202ENST00000361924 7772 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.327e-7■■□□□ 13
DDX55Q8NHQ9 EIF4G1-223ENST00000444134 558 ntTSL 512.92□□□□□ -0.347e-7■■□□□ 13
DDX55Q8NHQ9 TMEM161B-AS1-207ENST00000506584 717 ntTSL 3 BASIC12.91□□□□□ -0.347e-7■■□□□ 13
DDX55Q8NHQ9 GOLGA4-201ENST00000356847 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.387e-7■■□□□ 13
DDX55Q8NHQ9 TAF1-208ENST00000462588 1826 ntTSL 1 (best)11.59□□□□□ -0.557e-7■■□□□ 13
DDX55Q8NHQ9 CYB5B-203ENST00000514123 2492 ntTSL 1 (best)11.54□□□□□ -0.567e-7■■□□□ 13
DDX55Q8NHQ9 TAF1-211ENST00000468167 1767 ntTSL 511.42□□□□□ -0.587e-7■■□□□ 13
DDX55Q8NHQ9 BSDC1-204ENST00000444377 2925 ntTSL 1 (best)11.34□□□□□ -0.597e-7■■□□□ 13
DDX55Q8NHQ9 TAF1-210ENST00000467309 1313 ntTSL 1 (best)10.88□□□□□ -0.677e-7■■□□□ 13
DDX55Q8NHQ9 TAF1-202ENST00000373775 2199 ntTSL 510.25□□□□□ -0.777e-7■■□□□ 13
DDX55Q8NHQ9 TAF1-205ENST00000437147 2295 ntTSL 1 (best)9.9□□□□□ -0.837e-7■■□□□ 13
DDX55Q8NHQ9 LAMP2-204ENST00000486593 1069 ntTSL 59.76□□□□□ -0.857e-7■■□□□ 13
DDX55Q8NHQ9 TAF1-215ENST00000482544 768 ntTSL 39.57□□□□□ -0.887e-7■■□□□ 13
DDX55Q8NHQ9 LAMP2-202ENST00000371335 4030 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.997e-7■■□□□ 13
DDX55Q8NHQ9 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.037e-7■■□□□ 13
DDX55Q8NHQ9 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC8.57□□□□□ -1.047e-7■■□□□ 13
DDX55Q8NHQ9 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.64□□□□□ -1.517e-7■■□□□ 13
DDX55Q8NHQ9 TMEM161B-AS1-211ENST00000512724 570 ntTSL 35.59□□□□□ -1.517e-7■■□□□ 13
DDX55Q8NHQ9 GOLGA4-207ENST00000437131 6947 ntTSL 1 (best)2.48□□□□□ -2.017e-7■■□□□ 13
DDX55Q8NHQ9 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.57■□□□□ 0.723e-8■■□□□ 13
DDX55Q8NHQ9 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.673e-8■■□□□ 13
DDX55Q8NHQ9 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.064e-16■■□□□ 13
DDX55Q8NHQ9 TAF15-210ENST00000604694 891 ntTSL 521.14■□□□□ 0.974e-16■■□□□ 13
DDX55Q8NHQ9 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.834e-16■■□□□ 13
DDX55Q8NHQ9 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.484e-16■■□□□ 13
DDX55Q8NHQ9 VCP-207ENST00000493886 2942 ntTSL 214.97□□□□□ -0.014e-11■■□□□ 13
DDX55Q8NHQ9 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.034e-11■■□□□ 13
DDX55Q8NHQ9 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC16.21■□□□□ 0.193e-14■■□□□ 13
DDX55Q8NHQ9 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.11■□□□□ 0.495e-8■■□□□ 13
DDX55Q8NHQ9 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.3■□□□□ 0.365e-8■■□□□ 13
DDX55Q8NHQ9 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.93■□□□□ 0.35e-8■■□□□ 13
DDX55Q8NHQ9 DNM2-215ENST00000590806 5651 ntTSL 216.56■□□□□ 0.245e-8■■□□□ 13
DDX55Q8NHQ9 DNM2-219ENST00000591818 538 ntTSL 416.55■□□□□ 0.245e-8■■□□□ 13
DDX55Q8NHQ9 DNM2-221ENST00000593203 2507 ntTSL 215.26■□□□□ 0.035e-8■■□□□ 13
DDX55Q8NHQ9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.515e-56■■□□□ 13
DDX55Q8NHQ9 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.435e-56■■□□□ 13
DDX55Q8NHQ9 RBP4-203ENST00000371469 814 ntTSL 5 BASIC15.84■□□□□ 0.135e-56■■□□□ 13
DDX55Q8NHQ9 RBP4-204ENST00000629763 838 ntTSL 5 BASIC13.52□□□□□ -0.255e-56■■□□□ 13
DDX55Q8NHQ9 TP53-219ENST00000610538 2580 ntTSL 1 (best) BASIC13.89□□□□□ -0.197e-7■■□□□ 13
DDX55Q8NHQ9 TP53-206ENST00000455263 2580 ntTSL 1 (best) BASIC13.89□□□□□ -0.197e-7■■□□□ 13
DDX55Q8NHQ9 TP53-202ENST00000359597 1152 ntTSL 1 (best) BASIC13.79□□□□□ -0.27e-7■■□□□ 13
DDX55Q8NHQ9 TP53-203ENST00000413465 1018 ntTSL 1 (best) BASIC13.41□□□□□ -0.267e-7■■□□□ 13
DDX55Q8NHQ9 TP53-228ENST00000635293 1883 ntTSL 513.1□□□□□ -0.317e-7■■□□□ 13
DDX55Q8NHQ9 TP53-204ENST00000420246 2653 ntTSL 1 (best) BASIC12.78□□□□□ -0.367e-7■■□□□ 13
DDX55Q8NHQ9 TP53-227ENST00000622645 2653 ntTSL 1 (best) BASIC12.78□□□□□ -0.367e-7■■□□□ 13
DDX55Q8NHQ9 TP53-201ENST00000269305 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.397e-7■■□□□ 13
DDX55Q8NHQ9 TP53-226ENST00000620739 2579 ntTSL 1 (best) BASIC12.63□□□□□ -0.397e-7■■□□□ 13
DDX55Q8NHQ9 TP53-220ENST00000610623 2331 ntTSL 1 (best) BASIC12.62□□□□□ -0.397e-7■■□□□ 13
DDX55Q8NHQ9 TP53-208ENST00000504290 2331 ntTSL 1 (best) BASIC12.62□□□□□ -0.397e-7■■□□□ 13
DDX55Q8NHQ9 TP53-222ENST00000617185 2724 ntTSL 1 (best) BASIC12.33□□□□□ -0.447e-7■■□□□ 13
DDX55Q8NHQ9 TP53-218ENST00000610292 2639 ntTSL 1 (best) BASIC12.18□□□□□ -0.467e-7■■□□□ 13
DDX55Q8NHQ9 TP53-213ENST00000510385 2404 ntTSL 1 (best) BASIC11.86□□□□□ -0.517e-7■■□□□ 13
DDX55Q8NHQ9 TP53-223ENST00000618944 2404 ntTSL 1 (best) BASIC11.86□□□□□ -0.517e-7■■□□□ 13
DDX55Q8NHQ9 TP53-209ENST00000504937 2271 ntTSL 1 (best) BASIC11.61□□□□□ -0.557e-7■■□□□ 13
DDX55Q8NHQ9 TP53-224ENST00000619186 2271 ntTSL 1 (best) BASIC11.61□□□□□ -0.557e-7■■□□□ 13
DDX55Q8NHQ9 TP53-225ENST00000619485 2506 ntTSL 1 (best) BASIC10.93□□□□□ -0.667e-7■■□□□ 13
DDX55Q8NHQ9 TP53-205ENST00000445888 2506 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.667e-7■■□□□ 13
DDX55Q8NHQ9 PSMD3-202ENST00000415039 1598 ntTSL 223.94■■□□□ 1.421e-15■■□□□ 13
DDX55Q8NHQ9 PSMD3-204ENST00000540504 458 ntTSL 320.79■□□□□ 0.921e-15■■□□□ 13
DDX55Q8NHQ9 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.881e-15■■□□□ 13
DDX55Q8NHQ9 FAM157C-203ENST00000568070 480 ntTSL 313.16□□□□□ -0.31e-15■■□□□ 13
DDX55Q8NHQ9 FAM157C-204ENST00000570230 2184 ntTSL 5 BASIC11.63□□□□□ -0.551e-15■■□□□ 13
DDX55Q8NHQ9 PHC2-210ENST00000485928 2548 ntTSL 223.84■■□□□ 1.413e-11■■□□□ 13
DDX55Q8NHQ9 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.323e-11■■□□□ 13
DDX55Q8NHQ9 PHC2-201ENST00000257118 3870 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.273e-11■■□□□ 13
DDX55Q8NHQ9 PHC2-203ENST00000373422 2799 ntTSL 2 BASIC12.78□□□□□ -0.363e-11■■□□□ 13
DDX55Q8NHQ9 PHC2-204ENST00000431992 3789 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.473e-11■■□□□ 13
DDX55Q8NHQ9 SH3GLB2-212ENST00000483980 1015 ntTSL 234.99■■■■□ 3.194e-8■■□□□ 13
DDX55Q8NHQ9 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC29.57■■■□□ 2.323e-9■■□□□ 13
DDX55Q8NHQ9 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.263e-9■■□□□ 13
DDX55Q8NHQ9 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC28.61■■■□□ 2.173e-9■■□□□ 13
DDX55Q8NHQ9 AL136531.2-201ENST00000618770 1164 ntTSL 222.54■■□□□ 1.23e-9■■□□□ 13
DDX55Q8NHQ9 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC19.43■□□□□ 0.73e-9■■□□□ 13
DDX55Q8NHQ9 FKBP1A-207ENST00000474657 641 ntTSL 215.03■□□□□ -03e-9■■□□□ 13
DDX55Q8NHQ9 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.748e-30■■□□□ 13
Retrieved 100 of 15,504 protein–RNA pairs in 114.1 ms