Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC14.3□□□□□ -0.12
COL7A1Q02388 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC14.3□□□□□ -0.12
COL7A1Q02388 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.3□□□□□ -0.12
COL7A1Q02388 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
COL7A1Q02388 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL7A1Q02388 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
COL7A1Q02388 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
COL7A1Q02388 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL7A1Q02388 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL7A1Q02388 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL7A1Q02388 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL7A1Q02388 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL7A1Q02388 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
COL7A1Q02388 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC14.3□□□□□ -0.12
COL7A1Q02388 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC14.3□□□□□ -0.12
COL7A1Q02388 SLC25A1P2-201ENST00000430693 912 ntBASIC14.3□□□□□ -0.12
COL7A1Q02388 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC14.3□□□□□ -0.12
COL7A1Q02388 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.3□□□□□ -0.12
COL7A1Q02388 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL7A1Q02388 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL7A1Q02388 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL7A1Q02388 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL7A1Q02388 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL7A1Q02388 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL7A1Q02388 HIST1H2APS4-201ENST00000362070 348 ntBASIC14.29□□□□□ -0.12
COL7A1Q02388 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
COL7A1Q02388 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC14.29□□□□□ -0.12
COL7A1Q02388 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC14.29□□□□□ -0.12
COL7A1Q02388 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL7A1Q02388 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC14.29□□□□□ -0.12
COL7A1Q02388 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL7A1Q02388 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC14.29□□□□□ -0.12
COL7A1Q02388 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
COL7A1Q02388 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL7A1Q02388 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL7A1Q02388 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL7A1Q02388 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL7A1Q02388 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC14.29□□□□□ -0.12
COL7A1Q02388 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.29□□□□□ -0.12
COL7A1Q02388 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.29□□□□□ -0.12
COL7A1Q02388 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
COL7A1Q02388 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC14.29□□□□□ -0.12
COL7A1Q02388 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL7A1Q02388 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC14.28□□□□□ -0.12
COL7A1Q02388 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC14.28□□□□□ -0.12
COL7A1Q02388 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC14.28□□□□□ -0.12
COL7A1Q02388 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC14.28□□□□□ -0.12
COL7A1Q02388 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
COL7A1Q02388 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL7A1Q02388 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
COL7A1Q02388 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC14.28□□□□□ -0.12
COL7A1Q02388 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC14.28□□□□□ -0.12
COL7A1Q02388 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL7A1Q02388 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL7A1Q02388 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL7A1Q02388 RN7SL510P-201ENST00000581311 263 ntBASIC14.28□□□□□ -0.12
COL7A1Q02388 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.28□□□□□ -0.12
COL7A1Q02388 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL7A1Q02388 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL7A1Q02388 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL7A1Q02388 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL7A1Q02388 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL7A1Q02388 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC14.28□□□□□ -0.12
COL7A1Q02388 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL7A1Q02388 AC096733.2-201ENST00000609937 1394 ntBASIC14.28□□□□□ -0.12
COL7A1Q02388 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL7A1Q02388 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL7A1Q02388 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC14.28□□□□□ -0.12
COL7A1Q02388 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC14.28□□□□□ -0.12
COL7A1Q02388 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC14.28□□□□□ -0.12
COL7A1Q02388 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
COL7A1Q02388 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC14.28□□□□□ -0.12
COL7A1Q02388 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC14.28□□□□□ -0.12
COL7A1Q02388 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC14.28□□□□□ -0.12
COL7A1Q02388 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL7A1Q02388 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL7A1Q02388 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL7A1Q02388 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL7A1Q02388 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
COL7A1Q02388 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL7A1Q02388 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC14.27□□□□□ -0.12
COL7A1Q02388 VENTXP5-201ENST00000523979 775 ntBASIC14.27□□□□□ -0.12
COL7A1Q02388 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
COL7A1Q02388 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL7A1Q02388 DFFB-212ENST00000625756 649 ntTSL 5 BASIC14.27□□□□□ -0.12
COL7A1Q02388 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL7A1Q02388 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL7A1Q02388 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC14.27□□□□□ -0.13
COL7A1Q02388 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL7A1Q02388 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC14.27□□□□□ -0.13
COL7A1Q02388 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL7A1Q02388 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC14.27□□□□□ -0.13
COL7A1Q02388 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL7A1Q02388 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
COL7A1Q02388 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC14.27□□□□□ -0.13
COL7A1Q02388 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC14.27□□□□□ -0.13
COL7A1Q02388 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL7A1Q02388 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL7A1Q02388 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
COL7A1Q02388 GOLGA2P6-201ENST00000340929 2049 ntBASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms