Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.64■□□□□ 0.57
SOX3P41225 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SOX3P41225 AP003097.1-201ENST00000530657 1135 ntBASIC18.64■□□□□ 0.57
SOX3P41225 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.64■□□□□ 0.57
SOX3P41225 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.64■□□□□ 0.57
SOX3P41225 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.64■□□□□ 0.57
SOX3P41225 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX3P41225 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.64■□□□□ 0.57
SOX3P41225 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.63■□□□□ 0.57
SOX3P41225 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.63■□□□□ 0.57
SOX3P41225 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.63■□□□□ 0.57
SOX3P41225 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.63■□□□□ 0.57
SOX3P41225 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.63■□□□□ 0.57
SOX3P41225 AC026366.1-201ENST00000488803 879 ntBASIC18.63■□□□□ 0.57
SOX3P41225 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.63■□□□□ 0.57
SOX3P41225 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.63■□□□□ 0.57
SOX3P41225 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.63■□□□□ 0.57
SOX3P41225 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 AL020996.1-203ENST00000536896 2307 ntBASIC18.63■□□□□ 0.57
SOX3P41225 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.63■□□□□ 0.57
SOX3P41225 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX3P41225 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SOX3P41225 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX3P41225 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX3P41225 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX3P41225 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.62■□□□□ 0.57
SOX3P41225 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SOX3P41225 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SOX3P41225 KRT18P29-201ENST00000397031 1267 ntBASIC18.62■□□□□ 0.57
SOX3P41225 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.62■□□□□ 0.57
SOX3P41225 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SOX3P41225 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.62■□□□□ 0.57
SOX3P41225 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.62■□□□□ 0.57
SOX3P41225 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.62■□□□□ 0.57
SOX3P41225 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX3P41225 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX3P41225 SOX15-203ENST00000570788 1093 ntBASIC18.62■□□□□ 0.57
SOX3P41225 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX3P41225 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SOX3P41225 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX3P41225 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX3P41225 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.62■□□□□ 0.57
SOX3P41225 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SOX3P41225 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.62■□□□□ 0.57
SOX3P41225 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.62■□□□□ 0.57
SOX3P41225 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SOX3P41225 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX3P41225 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SOX3P41225 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SOX3P41225 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SOX3P41225 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX3P41225 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX3P41225 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX3P41225 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX3P41225 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX3P41225 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX3P41225 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX3P41225 AC007225.1-201ENST00000566331 1836 ntBASIC18.61■□□□□ 0.57
SOX3P41225 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX3P41225 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX3P41225 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.61■□□□□ 0.57
SOX3P41225 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.61■□□□□ 0.57
SOX3P41225 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.61■□□□□ 0.57
SOX3P41225 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.61■□□□□ 0.57
SOX3P41225 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.61■□□□□ 0.57
SOX3P41225 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.61■□□□□ 0.57
SOX3P41225 AC006058.3-201ENST00000606217 1069 ntBASIC18.61■□□□□ 0.57
SOX3P41225 ITM2C-210ENST00000620962 501 ntBASIC18.61■□□□□ 0.57
SOX3P41225 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms