Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
USF1P22415 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
USF1P22415 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC16.79■□□□□ 0.28
USF1P22415 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC16.79■□□□□ 0.28
USF1P22415 KRT18P21-201ENST00000515767 1272 ntBASIC16.79■□□□□ 0.28
USF1P22415 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.79■□□□□ 0.28
USF1P22415 AC023632.3-201ENST00000521633 145 ntBASIC16.79■□□□□ 0.28
USF1P22415 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.79■□□□□ 0.28
USF1P22415 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC16.79■□□□□ 0.28
USF1P22415 AC133561.5-201ENST00000635547 218 ntBASIC16.79■□□□□ 0.28
USF1P22415 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
USF1P22415 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
USF1P22415 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
USF1P22415 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
USF1P22415 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
USF1P22415 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
USF1P22415 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
USF1P22415 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
USF1P22415 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
USF1P22415 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.78■□□□□ 0.28
USF1P22415 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.78■□□□□ 0.28
USF1P22415 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.78■□□□□ 0.28
USF1P22415 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.78■□□□□ 0.28
USF1P22415 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.78■□□□□ 0.28
USF1P22415 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
USF1P22415 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.78■□□□□ 0.28
USF1P22415 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.78■□□□□ 0.28
USF1P22415 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
USF1P22415 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
USF1P22415 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC16.78■□□□□ 0.28
USF1P22415 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
USF1P22415 STAC-204ENST00000457375 1366 ntTSL 2 BASIC16.77■□□□□ 0.28
USF1P22415 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
USF1P22415 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
USF1P22415 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
USF1P22415 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC16.77■□□□□ 0.28
USF1P22415 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 AC087499.1-201ENST00000418141 1075 ntBASIC16.77■□□□□ 0.28
USF1P22415 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.77■□□□□ 0.28
USF1P22415 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.77■□□□□ 0.28
USF1P22415 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.77■□□□□ 0.28
USF1P22415 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC16.77■□□□□ 0.28
USF1P22415 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC16.77■□□□□ 0.28
USF1P22415 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
USF1P22415 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.77■□□□□ 0.28
USF1P22415 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
USF1P22415 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
USF1P22415 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
USF1P22415 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
USF1P22415 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC16.77■□□□□ 0.27
USF1P22415 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
USF1P22415 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
USF1P22415 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
USF1P22415 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USF1P22415 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF1P22415 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC16.76■□□□□ 0.27
USF1P22415 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC16.76■□□□□ 0.27
USF1P22415 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
USF1P22415 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms