Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SDC1P18827 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 PHGDH-210ENST00000641115 1638 ntBASIC18.9■□□□□ 0.62
SDC1P18827 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.9■□□□□ 0.62
SDC1P18827 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.9■□□□□ 0.62
SDC1P18827 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.9■□□□□ 0.62
SDC1P18827 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 AC133552.2-202ENST00000575694 574 ntBASIC18.9■□□□□ 0.62
SDC1P18827 AC080038.1-201ENST00000611274 1154 ntBASIC18.9■□□□□ 0.62
SDC1P18827 IKBKGP1-201ENST00000612193 1073 ntBASIC18.9■□□□□ 0.62
SDC1P18827 AC087289.5-201ENST00000586076 3175 ntBASIC18.9■□□□□ 0.62
SDC1P18827 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.9■□□□□ 0.62
SDC1P18827 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SDC1P18827 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC1P18827 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SDC1P18827 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SDC1P18827 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.89■□□□□ 0.62
SDC1P18827 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SDC1P18827 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SDC1P18827 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.89■□□□□ 0.61
SDC1P18827 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.89■□□□□ 0.61
SDC1P18827 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.89■□□□□ 0.61
SDC1P18827 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.89■□□□□ 0.61
SDC1P18827 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.89■□□□□ 0.61
SDC1P18827 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
SDC1P18827 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.89■□□□□ 0.61
SDC1P18827 AL050303.2-201ENST00000619798 666 ntBASIC18.89■□□□□ 0.61
SDC1P18827 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.89■□□□□ 0.61
SDC1P18827 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.89■□□□□ 0.61
SDC1P18827 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SDC1P18827 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.89■□□□□ 0.61
SDC1P18827 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC1P18827 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.88■□□□□ 0.61
SDC1P18827 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SDC1P18827 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SDC1P18827 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.88■□□□□ 0.61
SDC1P18827 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.88■□□□□ 0.61
SDC1P18827 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.88■□□□□ 0.61
SDC1P18827 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.88■□□□□ 0.61
SDC1P18827 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SDC1P18827 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC1P18827 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC1P18827 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.88■□□□□ 0.61
SDC1P18827 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.88■□□□□ 0.61
SDC1P18827 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC1P18827 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
SDC1P18827 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC1P18827 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC1P18827 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC1P18827 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC1P18827 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.87■□□□□ 0.61
SDC1P18827 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.87■□□□□ 0.61
SDC1P18827 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SDC1P18827 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SDC1P18827 LSM12P1-201ENST00000411836 588 ntBASIC18.87■□□□□ 0.61
SDC1P18827 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.87■□□□□ 0.61
SDC1P18827 CDCA4P2-201ENST00000441182 718 ntBASIC18.87■□□□□ 0.61
SDC1P18827 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.87■□□□□ 0.61
SDC1P18827 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.87■□□□□ 0.61
SDC1P18827 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SDC1P18827 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.87■□□□□ 0.61
SDC1P18827 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SDC1P18827 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.87■□□□□ 0.61
SDC1P18827 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC1P18827 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.87■□□□□ 0.61
SDC1P18827 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC1P18827 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.87■□□□□ 0.61
SDC1P18827 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC1P18827 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SDC1P18827 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SDC1P18827 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC1P18827 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms