Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 AL020996.1-203ENST00000536896 2307 ntBASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 AC092437.1-201ENST00000624794 1048 ntBASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV7S3A2A0A539 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 MIR5787-201ENST00000611784 55 ntBASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 AL589743.5-201ENST00000616611 1050 ntBASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV7S3A2A0A539 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 Z82202.1-201ENST00000623446 1880 ntBASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 AC005181.1-201ENST00000604782 1256 ntBASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 AP001271.2-201ENST00000624018 1556 ntBASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 BX323043.1-201ENST00000641006 1765 ntBASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.16■□□□□ 0.82
TCRBV7S3A2A0A539 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 IKBKGP1-201ENST00000612193 1073 ntBASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV7S3A2A0A539 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
TCRBV7S3A2A0A539 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
TCRBV7S3A2A0A539 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.14■□□□□ 0.82
TCRBV7S3A2A0A539 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms