Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 OR7E87P-201ENST00000532397 929 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 EMP1-206ENST00000537612 505 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 ASB8-215ENST00000540782 659 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AP003721.1-201ENST00000543907 864 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC008083.2-201ENST00000546707 476 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AL049780.1-201ENST00000554430 489 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 SEC11A-209ENST00000560266 1089 ntTSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 MIR548Y-201ENST00000582739 110 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AL020997.3-201ENST00000602843 359 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC009948.4-201ENST00000604692 675 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC109587.1-213ENST00000610844 652 ntTSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AL356274.1-201ENST00000617064 410 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 MSANTD3-206ENST00000613183 1755 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 ZNF396-201ENST00000306346 2788 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 LINC01924-201ENST00000589376 1722 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 ALPK1-201ENST00000177648 4537 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 ATP5A1P10-201ENST00000622403 1603 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 CASC23-201ENST00000534076 1563 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 ARHGAP42P4-201ENST00000549782 2934 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 TDRD3-209ENST00000621840 2497 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 ZMYM2-202ENST00000382871 5051 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 ZNF568-215ENST00000617745 2441 ntTSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 MMP20-201ENST00000260228 1956 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 ANGPT1-206ENST00000520734 1526 ntTSL 2 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 HYDIN2-203ENST00000614586 13885 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 BRD8-201ENST00000230901 3198 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 OPALIN-206ENST00000611913 3115 ntTSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 NR1I3-202ENST00000367980 1403 ntTSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 TIAL1-205ENST00000436547 1401 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 C12orf77-202ENST00000549262 1443 ntTSL 4 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 SLC36A2-201ENST00000335244 3421 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 FCGR2A-202ENST00000367972 1399 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 RAI14-205ENST00000503673 3339 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 MAPK10-319ENST00000641459 2542 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AL133464.1-201ENST00000635130 1705 ntTSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 LINC00559-201ENST00000569476 3867 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 VRK2-203ENST00000417641 2381 ntAPPRIS ALT2 TSL 2 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 OR7D4-201ENST00000308682 1022 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 OR4A16-201ENST00000314721 1081 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 IL17F-201ENST00000336123 850 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 RNA5SP448-201ENST00000363151 111 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 SNORD116-2-201ENST00000384274 95 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 SNORD116-6-201ENST00000384711 96 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC019178.1-201ENST00000392337 440 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 LINC01881-201ENST00000416103 412 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 EEF1A1P34-201ENST00000419888 1267 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AL592182.2-201ENST00000442477 858 ntTSL 2 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AL137074.1-201ENST00000442640 465 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 SETD6P1-201ENST00000444575 317 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 RPL7L1P11-201ENST00000446092 721 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC068135.1-201ENST00000446164 246 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 NPPA-AS1-202ENST00000446542 1032 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 RPL31P44-201ENST00000447680 377 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC112492.1-201ENST00000449607 712 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AL591379.2-201ENST00000450223 397 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC108868.2-201ENST00000451464 511 ntTSL 2 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 LINC01706-201ENST00000455299 748 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 RPS27AP2-201ENST00000457576 465 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 RNU7-27P-201ENST00000459281 62 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 RPL23AP44-201ENST00000482216 473 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AP000563.1-201ENST00000490865 758 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AL445187.1-201ENST00000502685 260 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 RNA5SP75-201ENST00000516841 111 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AP000907.3-201ENST00000530733 322 ntTSL 3 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC140118.1-201ENST00000539209 532 ntTSL 4 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 LINC02389-202ENST00000540024 557 ntTSL 4 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AGGF1P6-201ENST00000569213 976 ntBASIC8.38□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms