Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.46□□□□□ -1.37
SHMT2P34897 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
SHMT2P34897 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
SHMT2P34897 RNA5SP308-201ENST00000362532 115 ntBASIC6.46□□□□□ -1.38
SHMT2P34897 AL034417.1-201ENST00000399343 800 ntBASIC6.46□□□□□ -1.38
SHMT2P34897 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SHMT2P34897 AL353626.3-201ENST00000413399 657 ntBASIC6.46□□□□□ -1.38
SHMT2P34897 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.46□□□□□ -1.38
SHMT2P34897 AL713922.1-201ENST00000416477 747 ntBASIC6.46□□□□□ -1.38
SHMT2P34897 AL929472.1-201ENST00000417484 429 ntBASIC6.46□□□□□ -1.38
SHMT2P34897 AL451136.1-201ENST00000435399 325 ntBASIC6.46□□□□□ -1.38
SHMT2P34897 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC6.46□□□□□ -1.38
SHMT2P34897 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SHMT2P34897 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.46□□□□□ -1.38
SHMT2P34897 RN7SL393P-201ENST00000463588 296 ntBASIC6.46□□□□□ -1.38
SHMT2P34897 RN7SL612P-201ENST00000497704 295 ntBASIC6.46□□□□□ -1.38
SHMT2P34897 MRPL57P6-201ENST00000506570 309 ntBASIC6.46□□□□□ -1.38
SHMT2P34897 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC6.46□□□□□ -1.38
SHMT2P34897 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC6.46□□□□□ -1.38
SHMT2P34897 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC6.46□□□□□ -1.38
SHMT2P34897 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC6.46□□□□□ -1.38
SHMT2P34897 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC6.46□□□□□ -1.38
SHMT2P34897 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC6.46□□□□□ -1.38
SHMT2P34897 PPIAP14-201ENST00000577627 496 ntBASIC6.46□□□□□ -1.38
SHMT2P34897 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.46□□□□□ -1.38
SHMT2P34897 AC004241.2-201ENST00000614562 444 ntBASIC6.46□□□□□ -1.38
SHMT2P34897 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.46□□□□□ -1.38
SHMT2P34897 OR1N1-202ENST00000619659 939 ntBASIC6.46□□□□□ -1.38
SHMT2P34897 AC092683.1-202ENST00000620023 754 ntTSL 3 BASIC6.46□□□□□ -1.38
SHMT2P34897 AC159540.2-201ENST00000621110 754 ntTSL 3 BASIC6.46□□□□□ -1.38
SHMT2P34897 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SHMT2P34897 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SHMT2P34897 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SHMT2P34897 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC6.46□□□□□ -1.38
SHMT2P34897 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
SHMT2P34897 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SHMT2P34897 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SHMT2P34897 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SHMT2P34897 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.38
SHMT2P34897 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.45□□□□□ -1.38
SHMT2P34897 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.45□□□□□ -1.38
SHMT2P34897 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
SHMT2P34897 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 FANCD2P2-201ENST00000437591 1400 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 MTCO1P25-201ENST00000414449 1799 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 RNA5SP140-201ENST00000364524 92 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 AL033519.1-201ENST00000407266 307 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
SHMT2P34897 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC6.45□□□□□ -1.38
SHMT2P34897 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC6.45□□□□□ -1.38
SHMT2P34897 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC6.45□□□□□ -1.38
SHMT2P34897 AC073476.1-201ENST00000452854 407 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 SNRPCP11-201ENST00000492453 205 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC6.45□□□□□ -1.38
SHMT2P34897 OR4A13P-201ENST00000529316 942 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 RAB30-209ENST00000532548 644 ntTSL 3 BASIC6.45□□□□□ -1.38
SHMT2P34897 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC6.45□□□□□ -1.38
SHMT2P34897 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC6.45□□□□□ -1.38
SHMT2P34897 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.45□□□□□ -1.38
SHMT2P34897 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC6.45□□□□□ -1.38
SHMT2P34897 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC6.45□□□□□ -1.38
SHMT2P34897 RPL29P33-201ENST00000587474 316 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 AC005479.3-201ENST00000602790 431 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 AL390877.1-201ENST00000605704 214 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC6.45□□□□□ -1.38
SHMT2P34897 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC6.45□□□□□ -1.38
SHMT2P34897 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 MAPK10-357ENST00000641831 2858 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 AC007278.1-201ENST00000450893 1327 ntTSL 3 BASIC6.45□□□□□ -1.38
SHMT2P34897 PSMC1P6-201ENST00000477233 1319 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 LCOR-201ENST00000286067 4542 ntBASIC6.45□□□□□ -1.38
SHMT2P34897 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC6.45□□□□□ -1.38
SHMT2P34897 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC6.45□□□□□ -1.38
SHMT2P34897 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.45□□□□□ -1.38
SHMT2P34897 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHMT2P34897 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
SHMT2P34897 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
SHMT2P34897 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC6.44□□□□□ -1.38
SHMT2P34897 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.44□□□□□ -1.38
SHMT2P34897 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
SHMT2P34897 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SHMT2P34897 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.44□□□□□ -1.38
SHMT2P34897 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
SHMT2P34897 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SHMT2P34897 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.44□□□□□ -1.38
SHMT2P34897 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
SHMT2P34897 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
SHMT2P34897 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms