Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC027644.1-201ENST00000419595 298 ntBASIC7.69□□□□□ -1.18
MSX1P28360 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC7.69□□□□□ -1.18
MSX1P28360 AC068137.1-201ENST00000429272 584 ntBASIC7.69□□□□□ -1.18
MSX1P28360 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC7.69□□□□□ -1.18
MSX1P28360 S100A13-204ENST00000440685 686 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC7.69□□□□□ -1.18
MSX1P28360 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC7.69□□□□□ -1.18
MSX1P28360 OR4A47-201ENST00000446524 1064 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
MSX1P28360 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC7.69□□□□□ -1.18
MSX1P28360 DDX39BP2-208ENST00000453923 258 ntBASIC7.69□□□□□ -1.18
MSX1P28360 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC7.69□□□□□ -1.18
MSX1P28360 CREM-224ENST00000468236 582 ntTSL 3 BASIC7.69□□□□□ -1.18
MSX1P28360 RPL23AP10-201ENST00000489946 466 ntBASIC7.69□□□□□ -1.18
MSX1P28360 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC7.69□□□□□ -1.18
MSX1P28360 AL358832.1-201ENST00000497800 389 ntBASIC7.69□□□□□ -1.18
MSX1P28360 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC7.69□□□□□ -1.18
MSX1P28360 SELENOP-204ENST00000507920 786 ntTSL 5 BASIC7.69□□□□□ -1.18
MSX1P28360 AF279873.3-201ENST00000523063 766 ntTSL 3 BASIC7.69□□□□□ -1.18
MSX1P28360 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC7.69□□□□□ -1.18
MSX1P28360 AL442663.2-201ENST00000554385 511 ntBASIC7.69□□□□□ -1.18
MSX1P28360 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC7.69□□□□□ -1.18
MSX1P28360 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC7.69□□□□□ -1.18
MSX1P28360 MED31-202ENST00000574128 619 ntTSL 3 BASIC7.69□□□□□ -1.18
MSX1P28360 AP005119.2-201ENST00000579735 1105 ntBASIC7.69□□□□□ -1.18
MSX1P28360 ZNF611-214ENST00000600943 560 ntTSL 4 BASIC7.69□□□□□ -1.18
MSX1P28360 RN7SL760P-201ENST00000607344 270 ntBASIC7.69□□□□□ -1.18
MSX1P28360 MIR6829-201ENST00000620375 67 ntBASIC7.69□□□□□ -1.18
MSX1P28360 LINC01695-203ENST00000453420 4486 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 CCDC15-201ENST00000344762 3893 ntAPPRIS P2 TSL 5 BASIC7.69□□□□□ -1.18
MSX1P28360 PAFAH2-201ENST00000374282 3581 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 AL162632.3-201ENST00000566976 1625 ntBASIC7.69□□□□□ -1.18
MSX1P28360 AC021683.2-203ENST00000591283 4902 ntTSL 5 BASIC7.69□□□□□ -1.18
MSX1P28360 AL158206.1-201ENST00000563205 1965 ntBASIC7.69□□□□□ -1.18
MSX1P28360 KCTD6-201ENST00000355076 2425 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 LIMCH1-209ENST00000509277 3474 ntTSL 2 BASIC7.69□□□□□ -1.18
MSX1P28360 SKIV2L2-201ENST00000230640 4192 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 SPATA31A6-201ENST00000332857 4209 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 KARSP1-201ENST00000451871 1752 ntBASIC7.69□□□□□ -1.18
MSX1P28360 MBNL3-203ENST00000370849 1444 ntTSL 2 BASIC7.69□□□□□ -1.18
MSX1P28360 IGSF22-205ENST00000513874 4284 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
MSX1P28360 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC7.69□□□□□ -1.18
MSX1P28360 TOM1L1-220ENST00000575333 1849 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 AL589642.1-201ENST00000430787 2582 ntTSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 TEX21P-201ENST00000447107 1476 ntBASIC7.68□□□□□ -1.18
MSX1P28360 OR6N1-203ENST00000641846 2640 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
MSX1P28360 USP14-201ENST00000261601 4921 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 SLC17A2-202ENST00000360488 2270 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 SLC16A1P1-201ENST00000486743 1510 ntBASIC7.68□□□□□ -1.18
MSX1P28360 PTPRD-204ENST00000397606 5038 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 PTPRD-211ENST00000486161 5039 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 TAGAP-203ENST00000367066 3887 ntAPPRIS P4 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 GNL2-201ENST00000373062 2334 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 RXFP2-202ENST00000380314 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 R3HDM2P1-201ENST00000505381 1960 ntBASIC7.68□□□□□ -1.18
MSX1P28360 MAPK10-233ENST00000515650 2394 ntTSL 5 BASIC7.68□□□□□ -1.18
MSX1P28360 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 VPS36-201ENST00000378060 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 Z97200.1-201ENST00000606154 2045 ntBASIC7.68□□□□□ -1.18
MSX1P28360 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 RSPO2-203ENST00000517939 2487 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 TRHR-202ENST00000518632 1660 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
MSX1P28360 TSSK4-201ENST00000287913 1257 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 Y_RNA.38-201ENST00000362617 102 ntBASIC7.68□□□□□ -1.18
MSX1P28360 CREM-213ENST00000374734 711 ntTSL 5 BASIC7.68□□□□□ -1.18
MSX1P28360 Y_RNA.450-201ENST00000384198 113 ntBASIC7.68□□□□□ -1.18
MSX1P28360 MT-TL1-201ENST00000386347 75 ntBASIC7.68□□□□□ -1.18
MSX1P28360 FTH1P3-201ENST00000394290 584 ntBASIC7.68□□□□□ -1.18
MSX1P28360 GRXCR1-201ENST00000399770 991 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 EEF1A1P40-201ENST00000412883 573 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AC098592.2-201ENST00000413158 265 ntBASIC7.68□□□□□ -1.18
MSX1P28360 PPIAP2-201ENST00000414143 492 ntBASIC7.68□□□□□ -1.18
MSX1P28360 BTF3L4P3-201ENST00000418879 476 ntBASIC7.68□□□□□ -1.18
MSX1P28360 SLC44A3-AS1-205ENST00000424505 612 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AL359076.1-201ENST00000426860 420 ntTSL 3 BASIC7.68□□□□□ -1.18
MSX1P28360 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 AC006450.2-201ENST00000429482 581 ntTSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 ACTBP12-201ENST00000435871 418 ntBASIC7.68□□□□□ -1.18
MSX1P28360 CLUHP5-201ENST00000438421 774 ntBASIC7.68□□□□□ -1.18
MSX1P28360 RPL37A-204ENST00000441179 529 ntTSL 5 BASIC7.68□□□□□ -1.18
MSX1P28360 AL136982.6-201ENST00000444180 1238 ntTSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 AL451081.2-201ENST00000448115 933 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC7.68□□□□□ -1.18
MSX1P28360 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC7.68□□□□□ -1.18
MSX1P28360 PAX8-AS1-208ENST00000456685 1207 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 RNU7-157P-201ENST00000459600 66 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AC013787.1-201ENST00000460165 307 ntBASIC7.68□□□□□ -1.18
MSX1P28360 RN7SL395P-201ENST00000462960 291 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AC146507.1-201ENST00000468335 354 ntBASIC7.68□□□□□ -1.18
MSX1P28360 CREM-231ENST00000479070 939 ntTSL 5 BASIC7.68□□□□□ -1.18
MSX1P28360 LINC02016-201ENST00000488425 927 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 RPS3P7-201ENST00000488662 726 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 NDUFA5P12-201ENST00000503796 343 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC7.68□□□□□ -1.18
MSX1P28360 LINC01948-201ENST00000506836 656 ntTSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC7.68□□□□□ -1.18
MSX1P28360 LEF1-AS1-205ENST00000508286 444 ntTSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 AC079395.1-201ENST00000510981 262 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AC017007.1-201ENST00000511960 415 ntBASIC7.68□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 1198.5 ms