Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 MTND4P22-201ENST00000413116 1169 ntBASIC8.27□□□□□ -1.09
LIG1P18858 AL158827.1-201ENST00000416300 391 ntBASIC8.27□□□□□ -1.09
LIG1P18858 AC096570.1-201ENST00000419013 569 ntTSL 4 BASIC8.27□□□□□ -1.09
LIG1P18858 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC8.27□□□□□ -1.09
LIG1P18858 GSTA6P-201ENST00000424144 582 ntBASIC8.27□□□□□ -1.09
LIG1P18858 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC8.27□□□□□ -1.09
LIG1P18858 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC8.27□□□□□ -1.09
LIG1P18858 AL451074.4-201ENST00000447545 470 ntBASIC8.27□□□□□ -1.09
LIG1P18858 EXOSC3P1-201ENST00000448649 500 ntBASIC8.27□□□□□ -1.09
LIG1P18858 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC8.27□□□□□ -1.09
LIG1P18858 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC8.27□□□□□ -1.09
LIG1P18858 RN7SL160P-201ENST00000468558 284 ntBASIC8.27□□□□□ -1.09
LIG1P18858 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC8.27□□□□□ -1.09
LIG1P18858 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC8.27□□□□□ -1.09
LIG1P18858 ROPN1B-207ENST00000511082 782 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
LIG1P18858 AC106800.2-201ENST00000514009 1103 ntBASIC8.27□□□□□ -1.09
LIG1P18858 Y_RNA.655-201ENST00000515919 96 ntBASIC8.27□□□□□ -1.09
LIG1P18858 LINC01288-201ENST00000519189 529 ntTSL 4 BASIC8.27□□□□□ -1.09
LIG1P18858 AC130364.2-201ENST00000528639 604 ntBASIC8.27□□□□□ -1.09
LIG1P18858 AC008013.2-201ENST00000537555 348 ntTSL 5 BASIC8.27□□□□□ -1.09
LIG1P18858 LINC00640-201ENST00000554409 498 ntTSL 3 BASIC8.27□□□□□ -1.09
LIG1P18858 AC010333.1-201ENST00000563116 563 ntTSL 4 BASIC8.27□□□□□ -1.09
LIG1P18858 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC8.27□□□□□ -1.09
LIG1P18858 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC8.27□□□□□ -1.09
LIG1P18858 AC118757.1-202ENST00000589074 609 ntTSL 2 BASIC8.27□□□□□ -1.09
LIG1P18858 AC112503.1-201ENST00000608436 391 ntBASIC8.27□□□□□ -1.09
LIG1P18858 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC8.27□□□□□ -1.09
LIG1P18858 AL589743.4-201ENST00000610763 586 ntTSL 5 BASIC8.27□□□□□ -1.09
LIG1P18858 FAM27E3-202ENST00000614611 340 ntBASIC8.27□□□□□ -1.09
LIG1P18858 CCL4L2-212ENST00000615418 954 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
LIG1P18858 AC021755.4-201ENST00000616620 456 ntBASIC8.27□□□□□ -1.09
LIG1P18858 AC018558.4-201ENST00000622153 281 ntBASIC8.27□□□□□ -1.09
LIG1P18858 AC241377.2-202ENST00000636462 997 ntBASIC8.27□□□□□ -1.09
LIG1P18858 FGL2-202ENST00000637771 989 ntBASIC8.27□□□□□ -1.09
LIG1P18858 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
LIG1P18858 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC8.27□□□□□ -1.09
LIG1P18858 AL358913.2-201ENST00000553881 1548 ntBASIC8.27□□□□□ -1.09
LIG1P18858 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
LIG1P18858 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC8.27□□□□□ -1.09
LIG1P18858 AL449283.1-201ENST00000602631 3403 ntBASIC8.27□□□□□ -1.09
LIG1P18858 RRM2-213ENST00000641198 3431 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
LIG1P18858 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC8.27□□□□□ -1.09
LIG1P18858 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
LIG1P18858 AC009135.2-201ENST00000624136 1768 ntBASIC8.27□□□□□ -1.09
LIG1P18858 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC8.27□□□□□ -1.09
LIG1P18858 DDX6P1-205ENST00000441966 1436 ntBASIC8.27□□□□□ -1.09
LIG1P18858 AC093536.2-201ENST00000565257 1406 ntBASIC8.27□□□□□ -1.09
LIG1P18858 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC8.27□□□□□ -1.09
LIG1P18858 MFSD8-220ENST00000641243 1422 ntBASIC8.27□□□□□ -1.09
LIG1P18858 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
LIG1P18858 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
LIG1P18858 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC8.27□□□□□ -1.09
LIG1P18858 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
LIG1P18858 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
LIG1P18858 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
LIG1P18858 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC8.27□□□□□ -1.09
LIG1P18858 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
LIG1P18858 LINC01013-201ENST00000422700 1831 ntTSL 5 BASIC8.26□□□□□ -1.09
LIG1P18858 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
LIG1P18858 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
LIG1P18858 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
LIG1P18858 MED6-212ENST00000615788 1700 ntTSL 5 BASIC8.26□□□□□ -1.09
LIG1P18858 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC8.26□□□□□ -1.09
LIG1P18858 RAD17P2-201ENST00000451754 1977 ntBASIC8.26□□□□□ -1.09
LIG1P18858 ABRAXAS2-201ENST00000298492 2992 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
LIG1P18858 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
LIG1P18858 AL357556.1-201ENST00000421884 1388 ntBASIC8.26□□□□□ -1.09
LIG1P18858 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC8.26□□□□□ -1.09
LIG1P18858 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC8.26□□□□□ -1.09
LIG1P18858 CARD8-217ENST00000520753 3041 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
LIG1P18858 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC8.26□□□□□ -1.09
LIG1P18858 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
LIG1P18858 OR52A1-201ENST00000328942 939 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
LIG1P18858 RN7SKP36-201ENST00000363997 312 ntBASIC8.26□□□□□ -1.09
LIG1P18858 SNORA3.1-201ENST00000408166 111 ntBASIC8.26□□□□□ -1.09
LIG1P18858 SETP22-201ENST00000412243 957 ntBASIC8.26□□□□□ -1.09
LIG1P18858 AC090617.1-201ENST00000413674 323 ntTSL 2 BASIC8.26□□□□□ -1.09
LIG1P18858 AC009413.1-201ENST00000414823 399 ntBASIC8.26□□□□□ -1.09
LIG1P18858 RPL6P2-201ENST00000425480 783 ntBASIC8.26□□□□□ -1.09
LIG1P18858 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC8.26□□□□□ -1.09
LIG1P18858 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC8.26□□□□□ -1.09
LIG1P18858 CLNS1AP1-201ENST00000435954 682 ntBASIC8.26□□□□□ -1.09
LIG1P18858 MTND1P34-201ENST00000438556 671 ntBASIC8.26□□□□□ -1.09
LIG1P18858 CEACAMP5-201ENST00000448037 961 ntBASIC8.26□□□□□ -1.09
LIG1P18858 AC092421.1-201ENST00000448148 418 ntBASIC8.26□□□□□ -1.09
LIG1P18858 TDRG1-202ENST00000448433 1015 ntTSL 3 BASIC8.26□□□□□ -1.09
LIG1P18858 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC8.26□□□□□ -1.09
LIG1P18858 VN1R40P-201ENST00000455196 941 ntBASIC8.26□□□□□ -1.09
LIG1P18858 AP002371.1-201ENST00000463604 433 ntBASIC8.26□□□□□ -1.09
LIG1P18858 AC004263.1-201ENST00000479327 332 ntBASIC8.26□□□□□ -1.09
LIG1P18858 AC116562.1-201ENST00000485355 781 ntBASIC8.26□□□□□ -1.09
LIG1P18858 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC8.26□□□□□ -1.09
LIG1P18858 HLTF-AS1-201ENST00000492461 415 ntTSL 3 BASIC8.26□□□□□ -1.09
LIG1P18858 AC116049.2-201ENST00000508572 754 ntTSL 4 BASIC8.26□□□□□ -1.09
LIG1P18858 RNU6-311P-201ENST00000516224 102 ntBASIC8.26□□□□□ -1.09
LIG1P18858 GTF2IP11-201ENST00000526931 420 ntBASIC8.26□□□□□ -1.09
LIG1P18858 RGS5-220ENST00000528689 566 ntTSL 5 BASIC8.26□□□□□ -1.09
LIG1P18858 AC118942.1-201ENST00000529674 1035 ntBASIC8.26□□□□□ -1.09
LIG1P18858 LINC02389-202ENST00000540024 557 ntTSL 4 BASIC8.26□□□□□ -1.09
LIG1P18858 RNASE11-206ENST00000553849 1101 ntAPPRIS P2 TSL 1 (best) BASIC8.26□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms