Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
APOEP02649 SSXP3-201ENST00000442971 1300 ntBASIC6.96□□□□□ -1.3
APOEP02649 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
APOEP02649 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
APOEP02649 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.3
APOEP02649 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.96□□□□□ -1.3
APOEP02649 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.96□□□□□ -1.3
APOEP02649 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.96□□□□□ -1.3
APOEP02649 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
APOEP02649 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
APOEP02649 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.96□□□□□ -1.3
APOEP02649 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.96□□□□□ -1.3
APOEP02649 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.95□□□□□ -1.3
APOEP02649 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.95□□□□□ -1.3
APOEP02649 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
APOEP02649 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.95□□□□□ -1.3
APOEP02649 SNX18P3-202ENST00000565670 1750 ntBASIC6.95□□□□□ -1.3
APOEP02649 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.95□□□□□ -1.3
APOEP02649 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
APOEP02649 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
APOEP02649 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
APOEP02649 AC008957.3-201ENST00000624112 2242 ntBASIC6.95□□□□□ -1.3
APOEP02649 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
APOEP02649 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
APOEP02649 MIR551B-201ENST00000384984 96 ntBASIC6.95□□□□□ -1.3
APOEP02649 AL590635.1-201ENST00000406314 586 ntBASIC6.95□□□□□ -1.3
APOEP02649 RNA5SP155-201ENST00000411154 129 ntBASIC6.95□□□□□ -1.3
APOEP02649 AC096537.2-201ENST00000413707 714 ntBASIC6.95□□□□□ -1.3
APOEP02649 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC6.95□□□□□ -1.3
APOEP02649 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.95□□□□□ -1.3
APOEP02649 AL596268.1-201ENST00000427910 1048 ntBASIC6.95□□□□□ -1.3
APOEP02649 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC6.95□□□□□ -1.3
APOEP02649 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.95□□□□□ -1.3
APOEP02649 RPEP4-201ENST00000437636 602 ntBASIC6.95□□□□□ -1.3
APOEP02649 AP003385.3-201ENST00000472498 287 ntBASIC6.95□□□□□ -1.3
APOEP02649 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
APOEP02649 AP000662.1-201ENST00000530952 487 ntBASIC6.95□□□□□ -1.3
APOEP02649 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
APOEP02649 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC6.95□□□□□ -1.3
APOEP02649 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC6.95□□□□□ -1.3
APOEP02649 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC6.95□□□□□ -1.3
APOEP02649 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.95□□□□□ -1.3
APOEP02649 RN7SL66P-201ENST00000582099 264 ntBASIC6.95□□□□□ -1.3
APOEP02649 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.95□□□□□ -1.3
APOEP02649 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC6.95□□□□□ -1.3
APOEP02649 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.95□□□□□ -1.3
APOEP02649 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC6.95□□□□□ -1.3
APOEP02649 PHACTR2-201ENST00000305766 1851 ntAPPRIS P3 TSL 2 BASIC6.95□□□□□ -1.3
APOEP02649 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
APOEP02649 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
APOEP02649 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC6.95□□□□□ -1.3
APOEP02649 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
APOEP02649 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.95□□□□□ -1.3
APOEP02649 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
APOEP02649 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
APOEP02649 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
APOEP02649 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
APOEP02649 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
APOEP02649 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
APOEP02649 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.94□□□□□ -1.3
APOEP02649 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.94□□□□□ -1.3
APOEP02649 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.94□□□□□ -1.3
APOEP02649 BRD7P1-201ENST00000557705 1915 ntBASIC6.94□□□□□ -1.3
APOEP02649 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
APOEP02649 FUNDC2P3-201ENST00000334716 533 ntBASIC6.94□□□□□ -1.3
APOEP02649 RNA5SP512-201ENST00000364550 120 ntBASIC6.94□□□□□ -1.3
APOEP02649 NALCN-202ENST00000376200 1126 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
APOEP02649 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
APOEP02649 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
APOEP02649 AL589794.1-201ENST00000424971 390 ntBASIC6.94□□□□□ -1.3
APOEP02649 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC6.94□□□□□ -1.3
APOEP02649 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC6.94□□□□□ -1.3
APOEP02649 NPM1P23-201ENST00000440193 849 ntBASIC6.94□□□□□ -1.3
APOEP02649 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC6.94□□□□□ -1.3
APOEP02649 AL356121.1-201ENST00000442911 156 ntBASIC6.94□□□□□ -1.3
APOEP02649 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
APOEP02649 AKR1D1P1-201ENST00000457236 936 ntBASIC6.94□□□□□ -1.3
APOEP02649 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC6.94□□□□□ -1.3
APOEP02649 AC114324.2-202ENST00000503812 134 ntBASIC6.94□□□□□ -1.3
APOEP02649 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.94□□□□□ -1.3
APOEP02649 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC6.94□□□□□ -1.3
APOEP02649 OR4A13P-201ENST00000529316 942 ntBASIC6.94□□□□□ -1.3
APOEP02649 AC084851.2-201ENST00000530377 364 ntBASIC6.94□□□□□ -1.3
APOEP02649 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC6.94□□□□□ -1.3
APOEP02649 AC090527.1-201ENST00000557965 431 ntTSL 3 BASIC6.94□□□□□ -1.3
APOEP02649 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC6.94□□□□□ -1.3
APOEP02649 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC6.94□□□□□ -1.3
APOEP02649 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC6.94□□□□□ -1.3
APOEP02649 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC6.94□□□□□ -1.3
APOEP02649 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
APOEP02649 PCA3_2.1-201ENST00000612507 409 ntBASIC6.94□□□□□ -1.3
APOEP02649 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
APOEP02649 MIR6503-201ENST00000622884 86 ntBASIC6.94□□□□□ -1.3
APOEP02649 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
APOEP02649 AP000577.1-201ENST00000624366 878 ntBASIC6.94□□□□□ -1.3
APOEP02649 AC099654.15-201ENST00000639802 509 ntBASIC6.94□□□□□ -1.3
APOEP02649 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
APOEP02649 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC6.94□□□□□ -1.3
APOEP02649 AC079248.1-201ENST00000427568 1546 ntBASIC6.94□□□□□ -1.3
APOEP02649 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms