Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SETP9-201ENST00000423837 832 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 LINC00687-201ENST00000427835 558 ntTSL 3 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 HSFY7P-201ENST00000432672 318 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 RPL3P11-201ENST00000434028 1146 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 HSFY8P-201ENST00000437934 318 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 BMS1P11-201ENST00000442351 885 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 AL356121.1-201ENST00000442911 156 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 AC104162.1-204ENST00000443346 708 ntTSL 3 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 DEFA11P-201ENST00000446470 261 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 HSFY5P-201ENST00000453726 309 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 NMNAT1P3-201ENST00000457517 888 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 BMS1P9-201ENST00000457640 885 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 TFP1-201ENST00000460564 572 ntTSL 4 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 AC128716.1-201ENST00000475129 166 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 RPS14P8-201ENST00000478778 369 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 RN7SL379P-201ENST00000479912 293 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 TFP1-203ENST00000490470 561 ntTSL 4 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 PFN2-213ENST00000494827 793 ntTSL 4 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 RPL23AP80-201ENST00000495605 424 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 MTCYBP44-201ENST00000514835 823 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 AC089984.3-201ENST00000552838 363 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 AP003481.1-202ENST00000608214 503 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 MRPL57P3-201ENST00000619218 176 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 AC073857.1-201ENST00000625082 1054 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 AL163152.1-201ENST00000642001 374 ntBASIC6.97□□□□□ -1.29
DKK3Q9UBP4 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC6.97□□□□□ -1.29
DKK3Q9UBP4 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
DKK3Q9UBP4 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
DKK3Q9UBP4 AP002800.1-201ENST00000624982 2225 ntBASIC6.96□□□□□ -1.29
DKK3Q9UBP4 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
DKK3Q9UBP4 AC104837.1-201ENST00000444644 1587 ntBASIC6.96□□□□□ -1.29
DKK3Q9UBP4 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
DKK3Q9UBP4 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
DKK3Q9UBP4 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 RNA5SP152-201ENST00000365184 110 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 MIR551B-201ENST00000384984 96 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AL672212.1-201ENST00000422246 400 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 RPSAP24-201ENST00000461543 873 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AC135721.2-201ENST00000464237 300 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AGGF1P3-201ENST00000493675 1213 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AP005902.2-201ENST00000518393 307 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AP002004.1-206ENST00000532441 876 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 ACER3-213ENST00000533873 929 ntTSL 2 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 MTND4LP25-201ENST00000570218 163 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AL365223.1-201ENST00000574864 1297 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 MIR4312-201ENST00000579909 76 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 ZNF569-205ENST00000589833 762 ntTSL 3 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 KATNBL1P1-201ENST00000605192 748 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 5S_rRNA.23-201ENST00000612086 102 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 MIPEPP2-201ENST00000422560 1819 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AC008957.3-201ENST00000624112 2242 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AC005614.1-201ENST00000598952 3653 ntBASIC6.96□□□□□ -1.3
DKK3Q9UBP4 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC6.96□□□□□ -1.3
DKK3Q9UBP4 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AC083899.2-201ENST00000423285 1376 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.95□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms