Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NKX3-1Q99801 GMFG-201ENST00000253054 616 ntTSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NKX3-1Q99801 SNORA70.3-201ENST00000365075 132 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC024937.2-201ENST00000411669 1242 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC009362.1-201ENST00000427253 406 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC007365.2-201ENST00000428806 458 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC006333.1-204ENST00000429396 648 ntTSL 3 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 LINC01221-201ENST00000432488 662 ntTSL 3 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 NAP1L4P3-201ENST00000432820 1147 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 NDUFB3-202ENST00000433898 503 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 LINC00271-203ENST00000438618 1202 ntTSL 3 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AL592114.2-201ENST00000440142 532 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 BX005266.3-201ENST00000443013 1075 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 RPS7P4-201ENST00000444127 582 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC022415.1-202ENST00000486612 523 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC008868.1-201ENST00000509786 737 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 CFI-204ENST00000510800 667 ntTSL 2 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC114940.1-201ENST00000512162 1265 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AZIN1-AS1-211ENST00000520455 480 ntTSL 3 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 FCGR1CP-201ENST00000579737 1127 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AL512605.1-201ENST00000588215 1263 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NKX3-1Q99801 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 COX6CP16-201ENST00000603667 216 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 FP325318.1-201ENST00000616097 1263 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NKX3-1Q99801 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AP000577.1-201ENST00000624366 878 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 CYP2C8-213ENST00000628935 924 ntTSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NKX3-1Q99801 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
NKX3-1Q99801 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NKX3-1Q99801 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC007012.2-201ENST00000623206 1676 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC025809.2-201ENST00000625085 1802 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 TP63-205ENST00000392461 1251 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 RN7SKP137-201ENST00000411074 307 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 AC244033.1-201ENST00000426826 870 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 HNRNPA1P57-201ENST00000431359 530 ntTSL 4 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 AL590128.1-201ENST00000433407 286 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 ANXA2P2-201ENST00000435128 1020 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 AL139156.3-201ENST00000454802 394 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 EIF3LP2-201ENST00000457262 807 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 RNU6-775P-201ENST00000459318 96 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 RPSAP48-201ENST00000466509 889 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 AC074386.1-206ENST00000487102 761 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 RPL21P42-201ENST00000488408 464 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 MTCO1P55-201ENST00000489829 745 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 AC093766.1-201ENST00000502606 866 ntTSL 3 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 RNA5SP96-201ENST00000516041 107 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 RNU6-751P-201ENST00000516382 101 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 SCARNA18.2-201ENST00000516882 84 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 RPS20-202ENST00000518875 671 ntTSL 2 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 MTATP6P25-201ENST00000574491 261 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 MIR4428-201ENST00000584884 73 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms