Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
HLA-DMBP28068 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.07□□□□□ -1.6
HLA-DMBP28068 AL391261.1-201ENST00000555712 1479 ntBASIC5.07□□□□□ -1.6
HLA-DMBP28068 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HLA-DMBP28068 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC5.07□□□□□ -1.6
HLA-DMBP28068 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC022034.1-201ENST00000512867 2156 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AP002370.1-201ENST00000528055 1602 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 RNU1-55P-201ENST00000365510 158 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 PPIAP26-201ENST00000377951 522 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 IL20-203ENST00000391930 1153 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 EEF1GP6-201ENST00000402309 905 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 YWHAZP5-201ENST00000419975 730 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 BMS1P11-201ENST00000442351 885 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC068759.1-201ENST00000447709 470 ntTSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 VNN3-210ENST00000450865 596 ntTSL 4 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 BMS1P9-201ENST00000457640 885 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 RN7SL267P-201ENST00000485107 261 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 NPM1P27-201ENST00000502784 830 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC068152.1-203ENST00000570314 254 ntTSL 3 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC010761.3-201ENST00000578819 499 ntTSL 3 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC100832.2-201ENST00000582080 776 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 WDR45BP1-201ENST00000583470 1029 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC010519.1-201ENST00000599924 344 ntTSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AL365259.1-201ENST00000606334 509 ntTSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC005393.1-201ENST00000617916 584 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC135068.11-201ENST00000636378 921 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 OR2A3P-202ENST00000641249 1776 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HLA-DMBP28068 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 AC105749.1-201ENST00000631338 2008 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 HSPD1P1-201ENST00000503199 1726 ntBASIC5.06□□□□□ -1.6
HLA-DMBP28068 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
HLA-DMBP28068 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 TRIM53CP-201ENST00000531490 1354 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 METTL5-202ENST00000308099 629 ntTSL 3 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 NOX1-203ENST00000372964 661 ntTSL 2 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms