Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC00349-201ENST00000448748 841 ntTSL 5 BASIC6.26□□□□□ -1.41
SOX3P41225 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC6.26□□□□□ -1.41
SOX3P41225 RN7SL502P-201ENST00000481857 290 ntBASIC6.26□□□□□ -1.41
SOX3P41225 AC021146.11-201ENST00000503319 491 ntBASIC6.26□□□□□ -1.41
SOX3P41225 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
SOX3P41225 AC139272.1-201ENST00000505516 640 ntBASIC6.26□□□□□ -1.41
SOX3P41225 AC021220.1-201ENST00000507445 630 ntBASIC6.26□□□□□ -1.41
SOX3P41225 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC6.26□□□□□ -1.41
SOX3P41225 SNRPCP6-201ENST00000528310 210 ntBASIC6.26□□□□□ -1.41
SOX3P41225 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC6.26□□□□□ -1.41
SOX3P41225 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC6.26□□□□□ -1.41
SOX3P41225 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC6.26□□□□□ -1.41
SOX3P41225 LINC01028-201ENST00000586373 1045 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SOX3P41225 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC6.26□□□□□ -1.41
SOX3P41225 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC6.26□□□□□ -1.41
SOX3P41225 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC6.26□□□□□ -1.41
SOX3P41225 NQO2-209ENST00000606474 470 ntTSL 3 BASIC6.26□□□□□ -1.41
SOX3P41225 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SOX3P41225 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC6.26□□□□□ -1.41
SOX3P41225 SNORA16A-202ENST00000628458 135 ntBASIC6.26□□□□□ -1.41
SOX3P41225 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC6.26□□□□□ -1.41
SOX3P41225 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
SOX3P41225 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SOX3P41225 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SOX3P41225 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SOX3P41225 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SOX3P41225 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.26□□□□□ -1.41
SOX3P41225 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SOX3P41225 AC007114.2-201ENST00000576014 4281 ntBASIC6.26□□□□□ -1.41
SOX3P41225 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SOX3P41225 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SOX3P41225 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
SOX3P41225 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.25□□□□□ -1.41
SOX3P41225 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC6.25□□□□□ -1.41
SOX3P41225 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.25□□□□□ -1.41
SOX3P41225 AC013488.1-201ENST00000526618 1838 ntBASIC6.25□□□□□ -1.41
SOX3P41225 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC6.25□□□□□ -1.41
SOX3P41225 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC6.25□□□□□ -1.41
SOX3P41225 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.25□□□□□ -1.41
SOX3P41225 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
SOX3P41225 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
SOX3P41225 SNORA7A-201ENST00000384765 139 ntBASIC6.25□□□□□ -1.41
SOX3P41225 MIR551B-201ENST00000384984 96 ntBASIC6.25□□□□□ -1.41
SOX3P41225 RNA5SP474-201ENST00000391234 90 ntBASIC6.25□□□□□ -1.41
SOX3P41225 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
SOX3P41225 CDC42P6-201ENST00000421246 576 ntBASIC6.25□□□□□ -1.41
SOX3P41225 LINC00433-201ENST00000424165 888 ntTSL 2 BASIC6.25□□□□□ -1.41
SOX3P41225 RPS10P21-201ENST00000430654 475 ntBASIC6.25□□□□□ -1.41
SOX3P41225 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.25□□□□□ -1.41
SOX3P41225 RPEP4-201ENST00000437636 602 ntBASIC6.25□□□□□ -1.41
SOX3P41225 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC6.25□□□□□ -1.41
SOX3P41225 PFN1P11-201ENST00000445829 389 ntBASIC6.25□□□□□ -1.41
SOX3P41225 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC6.25□□□□□ -1.41
SOX3P41225 GBA3-201ENST00000503442 1232 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 AC097494.1-201ENST00000512898 732 ntTSL 3 BASIC6.25□□□□□ -1.41
SOX3P41225 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC6.25□□□□□ -1.41
SOX3P41225 AC026774.2-201ENST00000513990 1098 ntBASIC6.25□□□□□ -1.41
SOX3P41225 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC6.25□□□□□ -1.41
SOX3P41225 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC6.25□□□□□ -1.41
SOX3P41225 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC6.25□□□□□ -1.41
SOX3P41225 AL591767.3-201ENST00000554632 525 ntBASIC6.25□□□□□ -1.41
SOX3P41225 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC6.25□□□□□ -1.41
SOX3P41225 MIR6885-201ENST00000612241 66 ntBASIC6.25□□□□□ -1.41
SOX3P41225 BMS1P14-201ENST00000615056 606 ntTSL 5 BASIC6.25□□□□□ -1.41
SOX3P41225 HTR1DP1-201ENST00000616500 888 ntBASIC6.25□□□□□ -1.41
SOX3P41225 MIR6813-201ENST00000621638 56 ntBASIC6.25□□□□□ -1.41
SOX3P41225 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
SOX3P41225 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC6.25□□□□□ -1.41
SOX3P41225 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.25□□□□□ -1.41
SOX3P41225 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
SOX3P41225 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
SOX3P41225 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
SOX3P41225 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
SOX3P41225 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX3P41225 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
SOX3P41225 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
SOX3P41225 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
SOX3P41225 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
SOX3P41225 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.24□□□□□ -1.41
SOX3P41225 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SOX3P41225 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC6.24□□□□□ -1.41
SOX3P41225 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SOX3P41225 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
SOX3P41225 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.24□□□□□ -1.41
SOX3P41225 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms