Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 KATNBL1P5-201ENST00000605015 517 ntBASIC6.69□□□□□ -1.34
MSX2P35548 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
MSX2P35548 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC6.69□□□□□ -1.34
MSX2P35548 AC211486.5-201ENST00000616609 775 ntTSL 3 BASIC6.69□□□□□ -1.34
MSX2P35548 AP003789.1-201ENST00000617737 605 ntBASIC6.69□□□□□ -1.34
MSX2P35548 AC084824.4-201ENST00000620106 731 ntBASIC6.69□□□□□ -1.34
MSX2P35548 CT45A9-202ENST00000620704 1010 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
MSX2P35548 MIR6807-201ENST00000621968 92 ntBASIC6.69□□□□□ -1.34
MSX2P35548 C18orf12-201ENST00000623329 537 ntBASIC6.69□□□□□ -1.34
MSX2P35548 AP003476.1-201ENST00000623984 516 ntBASIC6.69□□□□□ -1.34
MSX2P35548 AC004943.3-201ENST00000624116 600 ntBASIC6.69□□□□□ -1.34
MSX2P35548 AC005355.2-201ENST00000625064 484 ntBASIC6.69□□□□□ -1.34
MSX2P35548 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC6.69□□□□□ -1.34
MSX2P35548 AL009031.1-201ENST00000632346 1026 ntTSL 2 BASIC6.69□□□□□ -1.34
MSX2P35548 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX2P35548 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX2P35548 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.69□□□□□ -1.34
MSX2P35548 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX2P35548 NEK2P4-201ENST00000425793 1329 ntBASIC6.69□□□□□ -1.34
MSX2P35548 AL512310.3-201ENST00000547023 1335 ntBASIC6.69□□□□□ -1.34
MSX2P35548 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSX2P35548 AC097717.1-227ENST00000594069 1322 ntTSL 5 BASIC6.69□□□□□ -1.34
MSX2P35548 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX2P35548 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX2P35548 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSX2P35548 AP004289.1-201ENST00000436307 2205 ntBASIC6.69□□□□□ -1.34
MSX2P35548 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
MSX2P35548 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX2P35548 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.69□□□□□ -1.34
MSX2P35548 AC073342.2-201ENST00000595842 1800 ntBASIC6.69□□□□□ -1.34
MSX2P35548 FO082842.1-201ENST00000423552 1370 ntBASIC6.69□□□□□ -1.34
MSX2P35548 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSX2P35548 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.69□□□□□ -1.34
MSX2P35548 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
MSX2P35548 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC6.68□□□□□ -1.34
MSX2P35548 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX2P35548 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 ZFP62-207ENST00000512132 4010 ntTSL 2 BASIC6.68□□□□□ -1.34
MSX2P35548 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC6.68□□□□□ -1.34
MSX2P35548 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 MMP10-201ENST00000279441 1758 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 SLC17A3-203ENST00000361703 1543 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 AC107977.1-201ENST00000355745 939 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AC226101.1-201ENST00000401483 387 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AL356057.1-202ENST00000402263 756 ntBASIC6.68□□□□□ -1.34
MSX2P35548 RN7SKP168-201ENST00000410910 300 ntBASIC6.68□□□□□ -1.34
MSX2P35548 FAM41AY1-201ENST00000421205 906 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX2P35548 AC007679.2-201ENST00000422116 781 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX2P35548 RCC2P2-201ENST00000422174 918 ntBASIC6.68□□□□□ -1.34
MSX2P35548 FNDC3B-205ENST00000423424 408 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX2P35548 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX2P35548 RPL12P28-201ENST00000430852 489 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AP001595.1-201ENST00000435878 516 ntTSL 2 BASIC6.68□□□□□ -1.34
MSX2P35548 RPS13P2-201ENST00000437890 455 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AP006193.1-201ENST00000440724 485 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AL136982.6-201ENST00000444180 1238 ntTSL 2 BASIC6.68□□□□□ -1.34
MSX2P35548 AL591438.2-201ENST00000452635 691 ntBASIC6.68□□□□□ -1.34
MSX2P35548 RPL31P53-201ENST00000457065 348 ntBASIC6.68□□□□□ -1.34
MSX2P35548 FAM41AY2-201ENST00000458627 906 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX2P35548 AC104982.1-201ENST00000478775 574 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AC063943.2-201ENST00000495697 534 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AC020699.1-201ENST00000505161 445 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC6.68□□□□□ -1.34
MSX2P35548 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX2P35548 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX2P35548 AC099687.1-201ENST00000531798 510 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX2P35548 AC135388.1-201ENST00000536512 353 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX2P35548 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 AL357093.2-202ENST00000556942 498 ntTSL 2 BASIC6.68□□□□□ -1.34
MSX2P35548 AC063923.2-201ENST00000562158 928 ntBASIC6.68□□□□□ -1.34
MSX2P35548 RN7SL376P-201ENST00000578594 264 ntBASIC6.68□□□□□ -1.34
MSX2P35548 EDRF1-AS1-205ENST00000601363 712 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX2P35548 AC069431.2-201ENST00000604149 1099 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AC087468.1-201ENST00000604365 630 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX2P35548 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC6.68□□□□□ -1.34
MSX2P35548 Metazoa_SRP.99-201ENST00000621370 254 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AC095038.2-201ENST00000621464 1070 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AC073862.4-201ENST00000622982 854 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AC117503.3-201ENST00000623811 601 ntBASIC6.68□□□□□ -1.34
MSX2P35548 AL139254.2-202ENST00000641937 1156 ntBASIC6.68□□□□□ -1.34
MSX2P35548 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX2P35548 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX2P35548 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX2P35548 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms