Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 KCNMB3P1-202ENST00000493696 3389 ntBASIC8.31□□□□□ -1.08
LIG1P18858 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 MAPK10-323ENST00000641493 3207 ntBASIC8.31□□□□□ -1.08
LIG1P18858 SOCS5P5-201ENST00000402732 1586 ntBASIC8.31□□□□□ -1.08
LIG1P18858 LINC01994-201ENST00000496220 1808 ntTSL 2 BASIC8.31□□□□□ -1.08
LIG1P18858 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 NUMB-231ENST00000559312 1439 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
LIG1P18858 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 RN7SKP63-201ENST00000363187 301 ntBASIC8.31□□□□□ -1.08
LIG1P18858 Y_RNA.318-201ENST00000365131 97 ntBASIC8.31□□□□□ -1.08
LIG1P18858 RNU6-152P-201ENST00000384037 107 ntBASIC8.31□□□□□ -1.08
LIG1P18858 NDUFV2-202ENST00000400033 942 ntTSL 3 BASIC8.31□□□□□ -1.08
LIG1P18858 SKINT1L-201ENST00000401057 817 ntBASIC8.31□□□□□ -1.08
LIG1P18858 RPSAP44-201ENST00000406712 884 ntBASIC8.31□□□□□ -1.08
LIG1P18858 RN7SKP131-201ENST00000410698 301 ntBASIC8.31□□□□□ -1.08
LIG1P18858 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC8.31□□□□□ -1.08
LIG1P18858 AJ239321.1-201ENST00000424255 564 ntBASIC8.31□□□□□ -1.08
LIG1P18858 MTCO3P30-201ENST00000426425 670 ntBASIC8.31□□□□□ -1.08
LIG1P18858 AC013262.1-201ENST00000426710 252 ntBASIC8.31□□□□□ -1.08
LIG1P18858 ARMC8P1-201ENST00000443069 1289 ntBASIC8.31□□□□□ -1.08
LIG1P18858 GAPDHP16-201ENST00000448152 962 ntBASIC8.31□□□□□ -1.08
LIG1P18858 FGF12-AS3-201ENST00000452848 291 ntTSL 3 BASIC8.31□□□□□ -1.08
LIG1P18858 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC8.31□□□□□ -1.08
LIG1P18858 OR7E62P-201ENST00000456741 477 ntBASIC8.31□□□□□ -1.08
LIG1P18858 CXCR6-203ENST00000457814 1184 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC8.31□□□□□ -1.08
LIG1P18858 RN7SL834P-201ENST00000461450 286 ntBASIC8.31□□□□□ -1.08
LIG1P18858 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 NPM1P17-201ENST00000479221 602 ntBASIC8.31□□□□□ -1.08
LIG1P18858 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC8.31□□□□□ -1.08
LIG1P18858 PRELID3BP7-201ENST00000503606 469 ntBASIC8.31□□□□□ -1.08
LIG1P18858 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC8.31□□□□□ -1.08
LIG1P18858 AC095059.2-201ENST00000510601 933 ntBASIC8.31□□□□□ -1.08
LIG1P18858 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC8.31□□□□□ -1.08
LIG1P18858 AC111000.6-201ENST00000514471 709 ntBASIC8.31□□□□□ -1.08
LIG1P18858 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC8.31□□□□□ -1.08
LIG1P18858 AC103409.1-201ENST00000521199 564 ntTSL 5 BASIC8.31□□□□□ -1.08
LIG1P18858 AC010376.1-201ENST00000522101 334 ntBASIC8.31□□□□□ -1.08
LIG1P18858 AC087277.1-201ENST00000529910 535 ntTSL 3 BASIC8.31□□□□□ -1.08
LIG1P18858 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC8.31□□□□□ -1.08
LIG1P18858 DPPA3P2-202ENST00000557188 1219 ntBASIC8.31□□□□□ -1.08
LIG1P18858 INO80-AS1-202ENST00000560178 444 ntTSL 3 BASIC8.31□□□□□ -1.08
LIG1P18858 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC8.31□□□□□ -1.08
LIG1P18858 PIGPP4-201ENST00000584447 307 ntBASIC8.31□□□□□ -1.08
LIG1P18858 OR7A11P-201ENST00000597719 953 ntBASIC8.31□□□□□ -1.08
LIG1P18858 GAS5-AS1-201ENST00000602767 694 ntBASIC8.31□□□□□ -1.08
LIG1P18858 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC8.31□□□□□ -1.08
LIG1P18858 AC103724.4-201ENST00000605981 292 ntBASIC8.31□□□□□ -1.08
LIG1P18858 AL022238.3-201ENST00000609279 443 ntBASIC8.31□□□□□ -1.08
LIG1P18858 XPNPEP3-206ENST00000614001 230 ntTSL 5 BASIC8.31□□□□□ -1.08
LIG1P18858 AL669942.2-201ENST00000620352 697 ntBASIC8.31□□□□□ -1.08
LIG1P18858 AP003108.4-201ENST00000623917 878 ntBASIC8.31□□□□□ -1.08
LIG1P18858 AC069542.2-201ENST00000624816 216 ntBASIC8.31□□□□□ -1.08
LIG1P18858 AL359745.1-201ENST00000626943 760 ntTSL 5 BASIC8.31□□□□□ -1.08
LIG1P18858 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC8.31□□□□□ -1.08
LIG1P18858 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
LIG1P18858 CASC19-232ENST00000641480 1244 ntBASIC8.31□□□□□ -1.08
LIG1P18858 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 AC007993.1-201ENST00000621298 2430 ntBASIC8.31□□□□□ -1.08
LIG1P18858 AGBL1-205ENST00000635782 3201 ntAPPRIS P2 TSL 5 BASIC8.31□□□□□ -1.08
LIG1P18858 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
LIG1P18858 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC8.3□□□□□ -1.08
LIG1P18858 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC8.3□□□□□ -1.08
LIG1P18858 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
LIG1P18858 AC100810.3-201ENST00000633189 2240 ntBASIC8.3□□□□□ -1.08
LIG1P18858 HDAC1P1-201ENST00000455482 1445 ntBASIC8.3□□□□□ -1.08
LIG1P18858 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC8.3□□□□□ -1.08
LIG1P18858 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC8.3□□□□□ -1.08
LIG1P18858 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
LIG1P18858 AC006600.2-201ENST00000624834 2506 ntBASIC8.3□□□□□ -1.08
LIG1P18858 SLC16A4-202ENST00000369781 2082 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
LIG1P18858 HSPD1P14-201ENST00000432666 1618 ntBASIC8.3□□□□□ -1.08
LIG1P18858 GRIK1-202ENST00000389124 2712 ntTSL 5 BASIC8.3□□□□□ -1.08
LIG1P18858 OR4D1-201ENST00000268912 1024 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
LIG1P18858 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
LIG1P18858 AC008549.2-201ENST00000333482 706 ntBASIC8.3□□□□□ -1.08
LIG1P18858 IL17F-201ENST00000336123 850 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
LIG1P18858 RN7SKP1-201ENST00000365525 307 ntBASIC8.3□□□□□ -1.08
LIG1P18858 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
LIG1P18858 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
LIG1P18858 SNORD15A-201ENST00000384214 148 ntBASIC8.3□□□□□ -1.08
LIG1P18858 RPL7-203ENST00000396466 762 ntTSL 3 BASIC8.3□□□□□ -1.08
LIG1P18858 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC8.3□□□□□ -1.08
LIG1P18858 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC8.3□□□□□ -1.08
LIG1P18858 AC231533.2-201ENST00000419045 978 ntBASIC8.3□□□□□ -1.08
LIG1P18858 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC8.3□□□□□ -1.08
LIG1P18858 GAS5-211ENST00000432536 959 ntTSL 2 BASIC8.3□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms