Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 RPL10P16-201ENST00000325000 645 ntBASIC6.71□□□□□ -1.34
MSX2P35548 RNU4-39P-201ENST00000362455 127 ntBASIC6.71□□□□□ -1.34
MSX2P35548 RNA5SP448-201ENST00000363151 111 ntBASIC6.71□□□□□ -1.34
MSX2P35548 RNA5SP79-201ENST00000365193 109 ntBASIC6.71□□□□□ -1.34
MSX2P35548 RNA5SP238-201ENST00000365464 120 ntBASIC6.71□□□□□ -1.34
MSX2P35548 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC6.71□□□□□ -1.34
MSX2P35548 AL034372.1-201ENST00000407586 754 ntBASIC6.71□□□□□ -1.34
MSX2P35548 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC6.71□□□□□ -1.34
MSX2P35548 AC231533.2-201ENST00000419045 978 ntBASIC6.71□□□□□ -1.34
MSX2P35548 MTCYBP7-201ENST00000419540 1134 ntBASIC6.71□□□□□ -1.34
MSX2P35548 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 AL121882.1-201ENST00000422893 417 ntBASIC6.71□□□□□ -1.34
MSX2P35548 SLIT1-AS1-201ENST00000424428 689 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC6.71□□□□□ -1.34
MSX2P35548 MRPS33P4-201ENST00000434892 317 ntBASIC6.71□□□□□ -1.34
MSX2P35548 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC6.71□□□□□ -1.34
MSX2P35548 LINC01284-201ENST00000442994 730 ntTSL 5 BASIC6.71□□□□□ -1.34
MSX2P35548 AL035660.2-201ENST00000461248 556 ntTSL 2 BASIC6.71□□□□□ -1.34
MSX2P35548 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
MSX2P35548 AC096743.1-201ENST00000485172 319 ntBASIC6.71□□□□□ -1.34
MSX2P35548 CREM-242ENST00000490511 469 ntTSL 2 BASIC6.71□□□□□ -1.34
MSX2P35548 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC6.71□□□□□ -1.34
MSX2P35548 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC6.71□□□□□ -1.34
MSX2P35548 AC117422.1-201ENST00000508263 379 ntTSL 3 BASIC6.71□□□□□ -1.34
MSX2P35548 RPS23-208ENST00000512493 443 ntTSL 3 BASIC6.71□□□□□ -1.34
MSX2P35548 AC022973.2-201ENST00000520146 549 ntTSL 4 BASIC6.71□□□□□ -1.34
MSX2P35548 IGHVIII-26-1-201ENST00000520387 250 ntBASIC6.71□□□□□ -1.34
MSX2P35548 AC084816.1-211ENST00000540994 485 ntTSL 3 BASIC6.71□□□□□ -1.34
MSX2P35548 AC012291.1-201ENST00000559666 429 ntTSL 5 BASIC6.71□□□□□ -1.34
MSX2P35548 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC6.71□□□□□ -1.34
MSX2P35548 MRPS21P9-201ENST00000571150 257 ntBASIC6.71□□□□□ -1.34
MSX2P35548 AC090286.3-201ENST00000573133 187 ntBASIC6.71□□□□□ -1.34
MSX2P35548 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC6.71□□□□□ -1.34
MSX2P35548 LINC01255-203ENST00000587189 591 ntTSL 4 BASIC6.71□□□□□ -1.34
MSX2P35548 AC005884.1-201ENST00000588604 429 ntTSL 5 BASIC6.71□□□□□ -1.34
MSX2P35548 AC074135.1-201ENST00000594318 581 ntTSL 4 BASIC6.71□□□□□ -1.34
MSX2P35548 AL391807.1-201ENST00000603261 712 ntTSL 5 BASIC6.71□□□□□ -1.34
MSX2P35548 AL390058.1-201ENST00000603834 629 ntBASIC6.71□□□□□ -1.34
MSX2P35548 AP000864.1-201ENST00000609424 650 ntBASIC6.71□□□□□ -1.34
MSX2P35548 AL731556.2-201ENST00000615610 770 ntBASIC6.71□□□□□ -1.34
MSX2P35548 EIF5P2-201ENST00000618904 1035 ntBASIC6.71□□□□□ -1.34
MSX2P35548 AC068880.4-201ENST00000623082 495 ntBASIC6.71□□□□□ -1.34
MSX2P35548 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
MSX2P35548 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC6.71□□□□□ -1.34
MSX2P35548 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC6.71□□□□□ -1.34
MSX2P35548 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 AL513185.3-201ENST00000433335 1300 ntBASIC6.71□□□□□ -1.34
MSX2P35548 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.71□□□□□ -1.34
MSX2P35548 AC022034.1-201ENST00000512867 2156 ntBASIC6.71□□□□□ -1.34
MSX2P35548 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
MSX2P35548 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.71□□□□□ -1.34
MSX2P35548 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.7□□□□□ -1.34
MSX2P35548 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
MSX2P35548 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.7□□□□□ -1.34
MSX2P35548 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.7□□□□□ -1.34
MSX2P35548 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC6.7□□□□□ -1.34
MSX2P35548 AC083806.2-201ENST00000617795 2685 ntBASIC6.7□□□□□ -1.34
MSX2P35548 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.7□□□□□ -1.34
MSX2P35548 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.7□□□□□ -1.34
MSX2P35548 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.7□□□□□ -1.34
MSX2P35548 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 SMR3A-201ENST00000226460 665 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 SPATA19-201ENST00000299140 861 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 RN7SKP107-201ENST00000364157 290 ntBASIC6.7□□□□□ -1.34
MSX2P35548 MIR654-201ENST00000385199 81 ntBASIC6.7□□□□□ -1.34
MSX2P35548 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
MSX2P35548 GNAI2P2-201ENST00000417003 916 ntBASIC6.7□□□□□ -1.34
MSX2P35548 ANKRD7-202ENST00000417525 1242 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
MSX2P35548 MTCO2P21-201ENST00000419780 677 ntBASIC6.7□□□□□ -1.34
MSX2P35548 AC017019.1-201ENST00000426129 261 ntBASIC6.7□□□□□ -1.34
MSX2P35548 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.7□□□□□ -1.34
MSX2P35548 EIF3IP1-201ENST00000433048 967 ntBASIC6.7□□□□□ -1.34
MSX2P35548 SCP2-207ENST00000435345 894 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC6.7□□□□□ -1.34
MSX2P35548 RNF216-IT1-201ENST00000443837 337 ntTSL 5 BASIC6.7□□□□□ -1.34
MSX2P35548 NPPA-AS1-202ENST00000446542 1032 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 AL009048.1-201ENST00000450437 298 ntBASIC6.7□□□□□ -1.34
MSX2P35548 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC6.7□□□□□ -1.34
MSX2P35548 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.7□□□□□ -1.34
MSX2P35548 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC6.7□□□□□ -1.34
MSX2P35548 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC6.7□□□□□ -1.34
MSX2P35548 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX2P35548 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms