Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 LINC00271-203ENST00000438618 1202 ntTSL 3 BASIC8.33□□□□□ -1.08
LIG1P18858 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC8.33□□□□□ -1.08
LIG1P18858 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC8.33□□□□□ -1.08
LIG1P18858 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC8.33□□□□□ -1.08
LIG1P18858 ZNF385D-AS2-202ENST00000448980 370 ntTSL 3 BASIC8.33□□□□□ -1.08
LIG1P18858 LINC00652-202ENST00000454749 963 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 AC010468.1-201ENST00000461022 817 ntBASIC8.33□□□□□ -1.08
LIG1P18858 AC018475.1-201ENST00000478358 465 ntBASIC8.33□□□□□ -1.08
LIG1P18858 RN7SL88P-201ENST00000480166 299 ntBASIC8.33□□□□□ -1.08
LIG1P18858 RN7SL423P-201ENST00000486202 304 ntBASIC8.33□□□□□ -1.08
LIG1P18858 AC112225.1-201ENST00000508230 297 ntBASIC8.33□□□□□ -1.08
LIG1P18858 AC097460.2-201ENST00000511857 741 ntBASIC8.33□□□□□ -1.08
LIG1P18858 AC027801.3-201ENST00000515049 698 ntBASIC8.33□□□□□ -1.08
LIG1P18858 AC126755.2-209ENST00000531453 699 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 OR5F2P-201ENST00000532761 941 ntBASIC8.33□□□□□ -1.08
LIG1P18858 AC138969.1-212ENST00000541593 699 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 NPIPA5-203ENST00000543801 699 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 AL132857.1-201ENST00000555180 708 ntBASIC8.33□□□□□ -1.08
LIG1P18858 AC087292.1-201ENST00000573371 512 ntTSL 5 BASIC8.33□□□□□ -1.08
LIG1P18858 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC8.33□□□□□ -1.08
LIG1P18858 AC084036.1-201ENST00000609190 508 ntBASIC8.33□□□□□ -1.08
LIG1P18858 AC231759.1-201ENST00000616455 597 ntBASIC8.33□□□□□ -1.08
LIG1P18858 AL450226.2-201ENST00000622913 439 ntBASIC8.33□□□□□ -1.08
LIG1P18858 AC078883.4-201ENST00000623218 367 ntBASIC8.33□□□□□ -1.08
LIG1P18858 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC8.33□□□□□ -1.08
LIG1P18858 LINC01173-201ENST00000629370 331 ntTSL 3 BASIC8.33□□□□□ -1.08
LIG1P18858 AL121594.5-201ENST00000631724 573 ntBASIC8.33□□□□□ -1.08
LIG1P18858 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC8.33□□□□□ -1.08
LIG1P18858 AC022819.1-201ENST00000563495 3910 ntBASIC8.33□□□□□ -1.08
LIG1P18858 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC8.33□□□□□ -1.08
LIG1P18858 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 AJ009632.1-201ENST00000433588 1376 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC8.33□□□□□ -1.08
LIG1P18858 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 MRPS31-201ENST00000323563 1462 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 CEACAM20-205ENST00000620096 1494 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 AL390862.1-201ENST00000635467 1469 ntBASIC8.32□□□□□ -1.08
LIG1P18858 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 AL669831.5-218ENST00000591702 1873 ntBASIC8.32□□□□□ -1.08
LIG1P18858 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 HYKK-205ENST00000566332 1422 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 ACAA2-206ENST00000589432 1840 ntTSL 5 BASIC8.32□□□□□ -1.08
LIG1P18858 ZNF29P-201ENST00000225587 168 ntBASIC8.32□□□□□ -1.08
LIG1P18858 RBMX2P2-201ENST00000257020 946 ntBASIC8.32□□□□□ -1.08
LIG1P18858 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
LIG1P18858 RNU5E-10P-201ENST00000363506 118 ntBASIC8.32□□□□□ -1.08
LIG1P18858 CD2-201ENST00000369477 478 ntTSL 2 BASIC8.32□□□□□ -1.08
LIG1P18858 CASP3-203ENST00000393588 677 ntTSL 4 BASIC8.32□□□□□ -1.08
LIG1P18858 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC8.32□□□□□ -1.08
LIG1P18858 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC8.32□□□□□ -1.08
LIG1P18858 GEMIN2P2-201ENST00000418195 715 ntBASIC8.32□□□□□ -1.08
LIG1P18858 ELOBP4-201ENST00000423418 296 ntBASIC8.32□□□□□ -1.08
LIG1P18858 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC8.32□□□□□ -1.08
LIG1P18858 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC8.32□□□□□ -1.08
LIG1P18858 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC8.32□□□□□ -1.08
LIG1P18858 LINC00881-201ENST00000467995 589 ntTSL 4 BASIC8.32□□□□□ -1.08
LIG1P18858 AC040975.1-201ENST00000472104 316 ntBASIC8.32□□□□□ -1.08
LIG1P18858 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC8.32□□□□□ -1.08
LIG1P18858 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC8.32□□□□□ -1.08
LIG1P18858 AC113404.1-201ENST00000502589 756 ntTSL 5 BASIC8.32□□□□□ -1.08
LIG1P18858 PANCR-201ENST00000503456 493 ntTSL 5 BASIC8.32□□□□□ -1.08
LIG1P18858 AMTN-202ENST00000504451 761 ntAPPRIS ALT1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC8.32□□□□□ -1.08
LIG1P18858 PABPC1P1-201ENST00000506347 591 ntBASIC8.32□□□□□ -1.08
LIG1P18858 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC8.32□□□□□ -1.08
LIG1P18858 PTS-202ENST00000524931 696 ntTSL 3 BASIC8.32□□□□□ -1.08
LIG1P18858 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC8.32□□□□□ -1.08
LIG1P18858 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC8.32□□□□□ -1.08
LIG1P18858 LINC01989-201ENST00000566930 1081 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 AC021506.1-201ENST00000581971 597 ntTSL 5 BASIC8.32□□□□□ -1.08
LIG1P18858 MIR4786-201ENST00000583954 80 ntBASIC8.32□□□□□ -1.08
LIG1P18858 PRELID3BP3-201ENST00000584963 545 ntBASIC8.32□□□□□ -1.08
LIG1P18858 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
LIG1P18858 AC002487.1-201ENST00000604565 994 ntBASIC8.32□□□□□ -1.08
LIG1P18858 AL355802.4-201ENST00000607635 548 ntBASIC8.32□□□□□ -1.08
LIG1P18858 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC8.32□□□□□ -1.08
LIG1P18858 AL049536.1-201ENST00000625043 744 ntBASIC8.32□□□□□ -1.08
LIG1P18858 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC8.32□□□□□ -1.08
LIG1P18858 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC8.32□□□□□ -1.08
LIG1P18858 AC183089.2-201ENST00000637931 916 ntBASIC8.32□□□□□ -1.08
LIG1P18858 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
LIG1P18858 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC8.32□□□□□ -1.08
LIG1P18858 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC8.32□□□□□ -1.08
LIG1P18858 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 VEZF1P1-201ENST00000423931 1541 ntBASIC8.32□□□□□ -1.08
LIG1P18858 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC8.32□□□□□ -1.08
LIG1P18858 DDX50P1-201ENST00000438163 2400 ntBASIC8.32□□□□□ -1.08
LIG1P18858 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
LIG1P18858 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 AC090771.1-201ENST00000585803 1618 ntBASIC8.32□□□□□ -1.08
LIG1P18858 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC8.32□□□□□ -1.08
LIG1P18858 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LIG1P18858 BROX-209ENST00000612948 4028 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms