Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 E2F6P3-201ENST00000441743 743 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXD4P09016 RN7SL88P-201ENST00000480166 299 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC6.22□□□□□ -1.41
HOXD4P09016 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC6.22□□□□□ -1.41
HOXD4P09016 AC055733.3-201ENST00000505214 523 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 AC007537.1-201ENST00000539347 327 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC6.22□□□□□ -1.41
HOXD4P09016 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC6.22□□□□□ -1.41
HOXD4P09016 AC023827.2-201ENST00000566880 1061 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 WBP1LP11-201ENST00000586141 328 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC6.22□□□□□ -1.41
HOXD4P09016 AC011500.1-201ENST00000601963 469 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 MIR7109-201ENST00000613748 65 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 AP005212.3-201ENST00000619964 528 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 AC012254.5-201ENST00000623573 478 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 AC004943.1-203ENST00000624370 1074 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXD4P09016 AL390036.1-203ENST00000635340 894 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXD4P09016 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXD4P09016 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXD4P09016 KLHL8-203ENST00000498875 5175 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HOXD4P09016 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC6.22□□□□□ -1.41
HOXD4P09016 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXD4P09016 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
HOXD4P09016 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HOXD4P09016 AC018765.1-201ENST00000623357 3446 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 SAMMSON-210ENST00000641260 1308 ntBASIC6.22□□□□□ -1.41
HOXD4P09016 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.22□□□□□ -1.41
HOXD4P09016 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.21□□□□□ -1.41
HOXD4P09016 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC6.21□□□□□ -1.41
HOXD4P09016 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
HOXD4P09016 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
HOXD4P09016 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC6.21□□□□□ -1.41
HOXD4P09016 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
HOXD4P09016 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
HOXD4P09016 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
HOXD4P09016 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
HOXD4P09016 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.41
HOXD4P09016 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.21□□□□□ -1.41
HOXD4P09016 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC6.21□□□□□ -1.42
HOXD4P09016 AC090181.3-201ENST00000624777 1514 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
HOXD4P09016 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HOXD4P09016 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXD4P09016 RNA5SP172-201ENST00000365061 118 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXD4P09016 CXADRP1-201ENST00000398098 1095 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC6.21□□□□□ -1.42
HOXD4P09016 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXD4P09016 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXD4P09016 ETF1P1-206ENST00000427296 984 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXD4P09016 CFLAR-212ENST00000440180 1198 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HOXD4P09016 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC6.21□□□□□ -1.42
HOXD4P09016 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXD4P09016 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXD4P09016 AC116917.1-201ENST00000520558 305 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC6.21□□□□□ -1.42
HOXD4P09016 OR7E154P-201ENST00000525174 932 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
HOXD4P09016 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.21□□□□□ -1.42
HOXD4P09016 OR4C49P-201ENST00000563891 900 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 ACTG1P15-201ENST00000570019 1063 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC6.21□□□□□ -1.42
HOXD4P09016 AC005899.3-201ENST00000580360 271 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXD4P09016 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXD4P09016 CXADRP3-202ENST00000617265 1100 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
HOXD4P09016 AC073857.1-201ENST00000625082 1054 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 MIR7515HG-257ENST00000625915 852 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXD4P09016 AL596275.2-203ENST00000641951 371 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
HOXD4P09016 CDY5P-201ENST00000411487 1580 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 CDY9P-201ENST00000451397 1580 ntBASIC6.21□□□□□ -1.42
HOXD4P09016 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HOXD4P09016 MED6-212ENST00000615788 1700 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXD4P09016 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HOXD4P09016 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HOXD4P09016 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC6.2□□□□□ -1.42
HOXD4P09016 MAPK10-357ENST00000641831 2858 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 AL358913.2-201ENST00000553881 1548 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXD4P09016 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 ATP5BP1-201ENST00000411980 1574 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
HOXD4P09016 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXD4P09016 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 NRIR-201ENST00000366140 799 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXD4P09016 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 AC006511.2-201ENST00000388966 660 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 VN1R12P-201ENST00000403778 876 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms