Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PLEKHS1-203ENST00000369309 2534 ntTSL 5 BASIC10.83□□□□□ -0.68
CUX1P39880 SUPT16H-201ENST00000216297 4684 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CUX1P39880 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
CUX1P39880 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CUX1P39880 AC023490.2-201ENST00000359859 470 ntBASIC10.83□□□□□ -0.68
CUX1P39880 U3.25-201ENST00000391209 220 ntBASIC10.83□□□□□ -0.68
CUX1P39880 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC10.83□□□□□ -0.68
CUX1P39880 AP000281.1-201ENST00000444036 316 ntBASIC10.83□□□□□ -0.68
CUX1P39880 UCK2-205ENST00000469256 753 ntTSL 3 BASIC10.83□□□□□ -0.68
CUX1P39880 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC10.83□□□□□ -0.68
CUX1P39880 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC10.83□□□□□ -0.68
CUX1P39880 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC10.83□□□□□ -0.68
CUX1P39880 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC10.83□□□□□ -0.68
CUX1P39880 AC009237.12-201ENST00000604755 742 ntBASIC10.83□□□□□ -0.68
CUX1P39880 AC183089.2-201ENST00000637931 916 ntBASIC10.83□□□□□ -0.68
CUX1P39880 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC10.83□□□□□ -0.68
CUX1P39880 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
CUX1P39880 RBMXL1-202ENST00000399794 5084 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
CUX1P39880 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC10.82□□□□□ -0.68
CUX1P39880 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
CUX1P39880 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CUX1P39880 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CUX1P39880 PYROXD1-201ENST00000240651 4055 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CUX1P39880 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CUX1P39880 FGD6-201ENST00000343958 9288 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CUX1P39880 TACC2-226ENST00000513429 4114 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CUX1P39880 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC10.82□□□□□ -0.68
CUX1P39880 YME1L1-203ENST00000376016 3856 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CUX1P39880 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
CUX1P39880 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
CUX1P39880 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
CUX1P39880 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
CUX1P39880 MIR1204-201ENST00000408388 67 ntBASIC10.82□□□□□ -0.68
CUX1P39880 AC016769.2-201ENST00000414815 475 ntBASIC10.82□□□□□ -0.68
CUX1P39880 Z68868.1-201ENST00000429048 544 ntBASIC10.82□□□□□ -0.68
CUX1P39880 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC10.82□□□□□ -0.68
CUX1P39880 RNA5SP434-201ENST00000516647 121 ntBASIC10.82□□□□□ -0.68
CUX1P39880 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC10.82□□□□□ -0.68
CUX1P39880 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC10.82□□□□□ -0.68
CUX1P39880 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
CUX1P39880 RNA5SP440-201ENST00000612665 119 ntBASIC10.82□□□□□ -0.68
CUX1P39880 AC022467.1-201ENST00000614738 749 ntBASIC10.82□□□□□ -0.68
CUX1P39880 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
CUX1P39880 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CUX1P39880 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC10.82□□□□□ -0.68
CUX1P39880 PPP6R3-206ENST00000524904 4292 ntAPPRIS ALT1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CUX1P39880 ZNF471-202ENST00000591537 5859 ntTSL 2 BASIC10.82□□□□□ -0.68
CUX1P39880 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
CUX1P39880 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
CUX1P39880 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
CUX1P39880 HIVEP3-202ENST00000372584 12319 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
CUX1P39880 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
CUX1P39880 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
CUX1P39880 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC10.81□□□□□ -0.68
CUX1P39880 SETD7-207ENST00000608958 5281 ntTSL 5 BASIC10.81□□□□□ -0.68
CUX1P39880 UBXN10-201ENST00000375099 5571 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CUX1P39880 EFTUD2-220ENST00000591382 3675 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
CUX1P39880 TMSB4XP4-201ENST00000323496 618 ntBASIC10.81□□□□□ -0.68
CUX1P39880 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
CUX1P39880 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC10.81□□□□□ -0.68
CUX1P39880 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC10.81□□□□□ -0.68
CUX1P39880 AC008945.1-201ENST00000505144 499 ntBASIC10.81□□□□□ -0.68
CUX1P39880 AC027308.1-201ENST00000517993 110 ntBASIC10.81□□□□□ -0.68
CUX1P39880 CETN3-206ENST00000522864 738 ntTSL 3 BASIC10.81□□□□□ -0.68
CUX1P39880 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC10.81□□□□□ -0.68
CUX1P39880 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC10.81□□□□□ -0.68
CUX1P39880 OR1N1-202ENST00000619659 939 ntBASIC10.81□□□□□ -0.68
CUX1P39880 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC10.81□□□□□ -0.68
CUX1P39880 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
CUX1P39880 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
CUX1P39880 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC10.81□□□□□ -0.68
CUX1P39880 AP003972.1-201ENST00000625192 5446 ntBASIC10.81□□□□□ -0.68
CUX1P39880 TRPC5-201ENST00000262839 5839 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CUX1P39880 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC10.8□□□□□ -0.68
CUX1P39880 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CUX1P39880 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
CUX1P39880 RNA5SP242-201ENST00000364171 118 ntBASIC10.8□□□□□ -0.68
CUX1P39880 RPL7AP14-201ENST00000424041 802 ntBASIC10.8□□□□□ -0.68
CUX1P39880 AC130360.1-201ENST00000425489 1117 ntBASIC10.8□□□□□ -0.68
CUX1P39880 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC10.8□□□□□ -0.68
CUX1P39880 AC063943.2-201ENST00000495697 534 ntBASIC10.8□□□□□ -0.68
CUX1P39880 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC10.8□□□□□ -0.68
CUX1P39880 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
CUX1P39880 CR383658.1-201ENST00000514609 734 ntBASIC10.8□□□□□ -0.68
CUX1P39880 LINC02270-202ENST00000515691 541 ntTSL 3 BASIC10.8□□□□□ -0.68
CUX1P39880 AC130365.2-201ENST00000525882 1201 ntBASIC10.8□□□□□ -0.68
CUX1P39880 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC10.8□□□□□ -0.68
CUX1P39880 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC10.8□□□□□ -0.68
CUX1P39880 AC007956.1-201ENST00000555623 542 ntBASIC10.8□□□□□ -0.68
CUX1P39880 AC018659.2-201ENST00000624690 715 ntBASIC10.8□□□□□ -0.68
CUX1P39880 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC10.8□□□□□ -0.68
CUX1P39880 AC011455.2-201ENST00000599320 3336 ntBASIC10.8□□□□□ -0.68
CUX1P39880 USP13-203ENST00000496897 2747 ntTSL 2 BASIC10.8□□□□□ -0.68
CUX1P39880 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC10.8□□□□□ -0.68
CUX1P39880 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC10.8□□□□□ -0.68
CUX1P39880 PDE4B-206ENST00000423207 4546 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CUX1P39880 OR13C1P-202ENST00000641378 2919 ntBASIC10.8□□□□□ -0.68
CUX1P39880 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
CUX1P39880 AC009237.3-203ENST00000442128 3551 ntBASIC10.8□□□□□ -0.68
CUX1P39880 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC10.8□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms