Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 AC083837.1-201ENST00000565297 2994 ntBASIC5.68□□□□□ -1.5
CDX1P47902 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC5.68□□□□□ -1.5
CDX1P47902 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC5.68□□□□□ -1.5
CDX1P47902 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 ATG12-202ENST00000500945 1430 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 AC011504.1-201ENST00000623331 4103 ntBASIC5.68□□□□□ -1.5
CDX1P47902 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.68□□□□□ -1.5
CDX1P47902 CYP19A1-216ENST00000559878 1958 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 OR52A1-201ENST00000328942 939 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CDX1P47902 RN7SKP257-201ENST00000364525 309 ntBASIC5.68□□□□□ -1.5
CDX1P47902 RNA5SP355-201ENST00000365317 135 ntBASIC5.68□□□□□ -1.5
CDX1P47902 NRIR-201ENST00000366140 799 ntTSL 3 BASIC5.68□□□□□ -1.5
CDX1P47902 CASP10-206ENST00000374650 1126 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 NPM1P31-201ENST00000399021 764 ntBASIC5.68□□□□□ -1.5
CDX1P47902 SUMO2P13-201ENST00000403109 272 ntBASIC5.68□□□□□ -1.5
CDX1P47902 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.68□□□□□ -1.5
CDX1P47902 AC245884.2-201ENST00000426257 404 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AC009362.1-201ENST00000427253 406 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.68□□□□□ -1.5
CDX1P47902 AK3P5-201ENST00000432033 519 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AL138930.1-201ENST00000446952 635 ntTSL 3 BASIC5.68□□□□□ -1.5
CDX1P47902 OR6C72P-201ENST00000451403 892 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC5.68□□□□□ -1.5
CDX1P47902 AC019080.2-201ENST00000453859 394 ntBASIC5.68□□□□□ -1.5
CDX1P47902 PDE4DIP-208ENST00000464103 1055 ntTSL 5 BASIC5.68□□□□□ -1.5
CDX1P47902 AC040975.1-201ENST00000472104 316 ntBASIC5.68□□□□□ -1.5
CDX1P47902 TECRP2-201ENST00000503270 928 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AC008496.1-201ENST00000509131 295 ntBASIC5.68□□□□□ -1.5
CDX1P47902 OR10J9P-201ENST00000511932 987 ntBASIC5.68□□□□□ -1.5
CDX1P47902 SETP21-201ENST00000514799 892 ntBASIC5.68□□□□□ -1.5
CDX1P47902 IGKV1D-32-201ENST00000517449 318 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC5.68□□□□□ -1.5
CDX1P47902 AC025524.2-202ENST00000523042 535 ntTSL 4 BASIC5.68□□□□□ -1.5
CDX1P47902 AP004607.5-201ENST00000532034 217 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC5.68□□□□□ -1.5
CDX1P47902 LYZ-202ENST00000548839 558 ntTSL 2 BASIC5.68□□□□□ -1.5
CDX1P47902 AC233290.1-201ENST00000553021 1186 ntBASIC5.68□□□□□ -1.5
CDX1P47902 BMS1P15-201ENST00000554269 1141 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC5.68□□□□□ -1.5
CDX1P47902 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC5.68□□□□□ -1.5
CDX1P47902 AL023806.2-201ENST00000603042 263 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AC024085.1-201ENST00000604299 432 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AC012510.1-201ENST00000607946 759 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AC027271.1-201ENST00000610270 610 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC5.68□□□□□ -1.5
CDX1P47902 AC027506.1-201ENST00000621395 198 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AC211433.3-201ENST00000623770 375 ntBASIC5.68□□□□□ -1.5
CDX1P47902 JAML-213ENST00000640745 951 ntTSL 5 BASIC5.68□□□□□ -1.5
CDX1P47902 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 CLCA3P-203ENST00000490028 2781 ntBASIC5.68□□□□□ -1.5
CDX1P47902 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
CDX1P47902 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.68□□□□□ -1.5
CDX1P47902 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
CDX1P47902 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 SRFBP1-201ENST00000339397 2855 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
CDX1P47902 EEF1A1P26-201ENST00000458319 1363 ntBASIC5.67□□□□□ -1.5
CDX1P47902 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
CDX1P47902 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 CBWD6-203ENST00000456520 1608 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 EEF1A1P16-201ENST00000325349 1414 ntBASIC5.67□□□□□ -1.5
CDX1P47902 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC5.67□□□□□ -1.5
CDX1P47902 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CDX1P47902 OR4F16-201ENST00000332831 995 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CDX1P47902 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC5.67□□□□□ -1.5
CDX1P47902 OR2G6-201ENST00000343414 1049 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CDX1P47902 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 Y_RNA.62-201ENST00000362840 99 ntBASIC5.67□□□□□ -1.5
CDX1P47902 RNA5SP218-201ENST00000363188 109 ntBASIC5.67□□□□□ -1.5
CDX1P47902 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 RNA5SP177-201ENST00000410122 107 ntBASIC5.67□□□□□ -1.5
CDX1P47902 RPS20P25-201ENST00000412447 352 ntBASIC5.67□□□□□ -1.5
CDX1P47902 AC017078.1-201ENST00000416146 368 ntBASIC5.67□□□□□ -1.5
CDX1P47902 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC5.67□□□□□ -1.5
CDX1P47902 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.67□□□□□ -1.5
CDX1P47902 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CDX1P47902 ANXA2P2-201ENST00000435128 1020 ntBASIC5.67□□□□□ -1.5
CDX1P47902 AL731892.1-201ENST00000437364 1192 ntBASIC5.67□□□□□ -1.5
CDX1P47902 RPS7P4-201ENST00000444127 582 ntBASIC5.67□□□□□ -1.5
CDX1P47902 PARD3-AS1-201ENST00000446211 302 ntTSL 2 BASIC5.67□□□□□ -1.5
CDX1P47902 REG1CP-206ENST00000447469 496 ntBASIC5.67□□□□□ -1.5
CDX1P47902 AC093799.1-201ENST00000452411 499 ntBASIC5.67□□□□□ -1.5
CDX1P47902 LINC00533-201ENST00000456103 537 ntTSL 3 BASIC5.67□□□□□ -1.5
CDX1P47902 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC5.67□□□□□ -1.5
CDX1P47902 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CDX1P47902 RN7SL180P-201ENST00000466769 294 ntBASIC5.67□□□□□ -1.5
CDX1P47902 AF305872.1-201ENST00000485217 471 ntBASIC5.67□□□□□ -1.5
CDX1P47902 DPH5-211ENST00000488176 1034 ntAPPRIS P4 TSL 3 BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms