Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
SOX3P41225 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
SOX3P41225 AL512329.1-201ENST00000404600 1592 ntBASIC6.35□□□□□ -1.39
SOX3P41225 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
SOX3P41225 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.35□□□□□ -1.39
SOX3P41225 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC6.34□□□□□ -1.39
SOX3P41225 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.34□□□□□ -1.39
SOX3P41225 AC125603.4-201ENST00000621942 2699 ntBASIC6.34□□□□□ -1.39
SOX3P41225 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 ABI1-206ENST00000376140 1446 ntTSL 5 BASIC6.34□□□□□ -1.39
SOX3P41225 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 FO082842.1-201ENST00000423552 1370 ntBASIC6.34□□□□□ -1.39
SOX3P41225 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.34□□□□□ -1.39
SOX3P41225 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.34□□□□□ -1.39
SOX3P41225 RN7SKP130-201ENST00000364924 301 ntBASIC6.34□□□□□ -1.39
SOX3P41225 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
SOX3P41225 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
SOX3P41225 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
SOX3P41225 RPL9P21-201ENST00000392269 505 ntBASIC6.34□□□□□ -1.39
SOX3P41225 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 AC000089.1-201ENST00000424559 801 ntBASIC6.34□□□□□ -1.39
SOX3P41225 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC6.34□□□□□ -1.39
SOX3P41225 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.34□□□□□ -1.39
SOX3P41225 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 FAM155A-IT1-201ENST00000449551 819 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC6.34□□□□□ -1.39
SOX3P41225 AC093895.1-201ENST00000506480 821 ntTSL 3 BASIC6.34□□□□□ -1.39
SOX3P41225 RNA5SP278-201ENST00000517055 102 ntBASIC6.34□□□□□ -1.39
SOX3P41225 AC113191.1-201ENST00000517759 403 ntBASIC6.34□□□□□ -1.39
SOX3P41225 OR4A21P-201ENST00000532759 944 ntBASIC6.34□□□□□ -1.39
SOX3P41225 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC6.34□□□□□ -1.39
SOX3P41225 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC6.34□□□□□ -1.39
SOX3P41225 IGKV2OR2-7-201ENST00000604652 304 ntBASIC6.34□□□□□ -1.39
SOX3P41225 AL137000.1-201ENST00000610528 1244 ntBASIC6.34□□□□□ -1.39
SOX3P41225 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC6.34□□□□□ -1.39
SOX3P41225 AP005139.1-201ENST00000580702 1647 ntBASIC6.34□□□□□ -1.39
SOX3P41225 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
SOX3P41225 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
SOX3P41225 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SOX3P41225 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
SOX3P41225 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
SOX3P41225 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.33□□□□□ -1.4
SOX3P41225 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC6.33□□□□□ -1.4
SOX3P41225 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.33□□□□□ -1.4
SOX3P41225 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
SOX3P41225 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SOX3P41225 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
SOX3P41225 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC6.33□□□□□ -1.4
SOX3P41225 BRD7P1-201ENST00000557705 1915 ntBASIC6.33□□□□□ -1.4
SOX3P41225 AC004014.2-201ENST00000623718 5122 ntBASIC6.33□□□□□ -1.4
SOX3P41225 RN7SKP191-201ENST00000364713 306 ntBASIC6.33□□□□□ -1.4
SOX3P41225 AC092634.1-201ENST00000366505 199 ntBASIC6.33□□□□□ -1.4
SOX3P41225 CD200R1L-201ENST00000398214 1296 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
SOX3P41225 ARSFP1-201ENST00000398758 477 ntBASIC6.33□□□□□ -1.4
SOX3P41225 MTND6P1-201ENST00000417434 424 ntBASIC6.33□□□□□ -1.4
SOX3P41225 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC6.33□□□□□ -1.4
SOX3P41225 PTPN2P1-201ENST00000423212 1072 ntBASIC6.33□□□□□ -1.4
SOX3P41225 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC6.33□□□□□ -1.4
SOX3P41225 TRBV29OR9-2-201ENST00000427589 333 ntBASIC6.33□□□□□ -1.4
SOX3P41225 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC6.33□□□□□ -1.4
SOX3P41225 AL022324.2-201ENST00000434827 780 ntBASIC6.33□□□□□ -1.4
SOX3P41225 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC6.33□□□□□ -1.4
SOX3P41225 RBMY2BP-202ENST00000451071 1156 ntBASIC6.33□□□□□ -1.4
SOX3P41225 RN7SL216P-201ENST00000471607 298 ntBASIC6.33□□□□□ -1.4
SOX3P41225 RN7SL654P-201ENST00000479178 292 ntBASIC6.33□□□□□ -1.4
SOX3P41225 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC6.33□□□□□ -1.4
SOX3P41225 AC074386.1-206ENST00000487102 761 ntBASIC6.33□□□□□ -1.4
SOX3P41225 AC063943.2-201ENST00000495697 534 ntBASIC6.33□□□□□ -1.4
SOX3P41225 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC6.33□□□□□ -1.4
SOX3P41225 AC137549.1-201ENST00000514243 533 ntBASIC6.33□□□□□ -1.4
SOX3P41225 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.33□□□□□ -1.4
SOX3P41225 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC6.33□□□□□ -1.4
SOX3P41225 OR9L1P-201ENST00000529493 933 ntBASIC6.33□□□□□ -1.4
SOX3P41225 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC6.33□□□□□ -1.4
SOX3P41225 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC6.33□□□□□ -1.4
SOX3P41225 AC027796.1-201ENST00000575593 512 ntBASIC6.33□□□□□ -1.4
SOX3P41225 AC020914.7-201ENST00000594477 545 ntBASIC6.33□□□□□ -1.4
SOX3P41225 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC6.33□□□□□ -1.4
SOX3P41225 AC111186.1-201ENST00000604684 130 ntBASIC6.33□□□□□ -1.4
SOX3P41225 AL138693.1-201ENST00000622219 129 ntBASIC6.33□□□□□ -1.4
SOX3P41225 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC6.33□□□□□ -1.4
SOX3P41225 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC6.33□□□□□ -1.4
SOX3P41225 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.33□□□□□ -1.4
SOX3P41225 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
SOX3P41225 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SOX3P41225 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
SOX3P41225 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SOX3P41225 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.33□□□□□ -1.4
SOX3P41225 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
SOX3P41225 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms