| HDAC11 | Q96DB2 | CNTN3-201 | ENST00000263665 | 4948 nt | APPRIS P1 TSL 1 (best) BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | SPAG9-209 | ENST00000510283 | 4949 nt | TSL 2 BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | PRDM2-202 | ENST00000311066 | 7437 nt | APPRIS ALT2 TSL 5 BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | USP37-203 | ENST00000415516 | 4516 nt | TSL 1 (best) BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | TEAD1-201 | ENST00000334310 | 3075 nt | TSL 1 (best) BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | TEAD1-205 | ENST00000527575 | 3063 nt | TSL 5 BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | MCCC1-210 | ENST00000492597 | 2774 nt | TSL 1 (best) BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | TTTY10-202 | ENST00000455084 | 1628 nt | TSL 1 (best) BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC083806.2-201 | ENST00000617795 | 2685 nt | BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | GPATCH2L-201 | ENST00000261530 | 14007 nt | TSL 2 BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | GPR89A-203 | ENST00000462900 | 1527 nt | TSL 2 BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | PCBP1-AS1-210 | ENST00000416395 | 2451 nt | TSL 2 BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | CCR2-204 | ENST00000445132 | 2386 nt | APPRIS P1 TSL 1 (best) BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | VTCN1-201 | ENST00000328189 | 2289 nt | TSL 5 BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC245100.4-202 | ENST00000634638 | 1342 nt | TSL 5 BASIC | 7.01 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | ZNF19-206 | ENST00000565100 | 2087 nt | TSL 5 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | LINC01252-201 | ENST00000499291 | 3673 nt | TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | MSR1-202 | ENST00000350896 | 3572 nt | TSL 5 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | DLEU2L-201 | ENST00000371086 | 3555 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | PCAT5-201 | ENST00000626667 | 3550 nt | TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC019270.1-201 | ENST00000523495 | 3488 nt | TSL 5 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | DNHD1-212 | ENST00000527990 | 14298 nt | APPRIS P1 TSL 5 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | DMD-228 | ENST00000541735 | 7080 nt | TSL 5 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | DEUP1-209 | ENST00000531792 | 1656 nt | TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AL451064.2-201 | ENST00000623514 | 1654 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | KIF1B-204 | ENST00000377086 | 10669 nt | TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AQP4-205 | ENST00000581374 | 1586 nt | TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | LRRFIP2-201 | ENST00000336686 | 3208 nt | TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | RTL9-203 | ENST00000540313 | 5225 nt | APPRIS P2 TSL 2 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | OR4M1-201 | ENST00000315957 | 1116 nt | APPRIS P1 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | HMGN2-201 | ENST00000361427 | 1191 nt | APPRIS P1 TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | ENSA-207 | ENST00000362052 | 703 nt | TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | RN7SKP184-201 | ENST00000362348 | 333 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | RNA5SP65-201 | ENST00000363166 | 119 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC007349.3-201 | ENST00000415356 | 872 nt | TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | LINC01497-201 | ENST00000420427 | 665 nt | TSL 3 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | SNX19-202 | ENST00000426933 | 888 nt | TSL 2 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC027124.1-201 | ENST00000440852 | 466 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | C2orf74-204 | ENST00000464909 | 726 nt | APPRIS P2 TSL 2 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | RNU6ATAC39P-201 | ENST00000516309 | 149 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | RN7SKP98-201 | ENST00000517070 | 156 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC021820.1-201 | ENST00000525564 | 808 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | NAV2-IT1-201 | ENST00000528204 | 506 nt | TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | LINC02207-201 | ENST00000554530 | 1256 nt | TSL 5 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC126323.4-201 | ENST00000566935 | 234 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | DCTN5-207 | ENST00000568272 | 523 nt | TSL 2 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC008551.1-201 | ENST00000575612 | 405 nt | TSL 5 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | RN7SL426P-201 | ENST00000579106 | 295 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC104984.1-201 | ENST00000581633 | 697 nt | TSL 3 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC015818.6-201 | ENST00000584274 | 634 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | ZNF569-205 | ENST00000589833 | 762 nt | TSL 3 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | TSPAN6-205 | ENST00000614008 | 900 nt | TSL 5 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC073857.1-201 | ENST00000625082 | 1054 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AL354702.2-202 | ENST00000641481 | 890 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AL136317.2-201 | ENST00000619851 | 2254 nt | TSL 2 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | CCDC125-203 | ENST00000396499 | 3615 nt | APPRIS P1 TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | MDM4-216 | ENST00000616250 | 9597 nt | TSL 5 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | HSDL2-201 | ENST00000398803 | 2983 nt | TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | Z97989.1-201 | ENST00000531702 | 2421 nt | BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | ZNF91-202 | ENST00000397082 | 3572 nt | APPRIS ALT2 TSL 2 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | RAB2B-201 | ENST00000397762 | 2928 nt | APPRIS P1 TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | GABRB2-209 | ENST00000612710 | 2470 nt | TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | CEACAM1-213 | ENST00000599389 | 1342 nt | TSL 5 BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | DYNC2LI1-210 | ENST00000605786 | 1346 nt | APPRIS ALT1 TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | IRF6-201 | ENST00000367021 | 4306 nt | APPRIS P1 TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | DDX6-208 | ENST00000620157 | 6152 nt | APPRIS P1 TSL 1 (best) BASIC | 7 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | ROR1-AS1-201 | ENST00000412349 | 1574 nt | TSL 1 (best) BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | ZFY-207 | ENST00000625061 | 2273 nt | TSL 2 BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | PDE8B-208 | ENST00000505283 | 3474 nt | TSL 1 (best) BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | TMEFF2-203 | ENST00000409056 | 3364 nt | TSL 1 (best) BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AP001157.1-201 | ENST00000550837 | 2339 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | DLG2-207 | ENST00000398309 | 7890 nt | TSL 1 (best) BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | TATDN2P3-201 | ENST00000452855 | 3665 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | FABP3-201 | ENST00000373713 | 725 nt | APPRIS P1 TSL 1 (best) BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | KCND3-AS1-201 | ENST00000419258 | 383 nt | TSL 3 BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | PUDPP2-201 | ENST00000431423 | 643 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | SCP2-207 | ENST00000435345 | 894 nt | TSL 1 (best) BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | FGF13-AS1-201 | ENST00000438238 | 849 nt | TSL 1 (best) BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AL159174.1-201 | ENST00000438267 | 811 nt | TSL 3 BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | RPS7P4-201 | ENST00000444127 | 582 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | LIX1L-AS1-207 | ENST00000448561 | 347 nt | TSL 3 BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC099328.2-201 | ENST00000465347 | 455 nt | TSL 3 BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC026254.2-201 | ENST00000475295 | 371 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | RN7SL382P-201 | ENST00000482631 | 282 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC117395.1-201 | ENST00000487390 | 403 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | EIF4E2P2-201 | ENST00000492033 | 736 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | RPL10P7-201 | ENST00000495649 | 625 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC007106.1-201 | ENST00000509666 | 600 nt | TSL 4 BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC122713.1-201 | ENST00000518368 | 1015 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | IGHVII-51-2-201 | ENST00000519778 | 259 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC073896.2-202 | ENST00000549860 | 437 nt | TSL 2 BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC069240.2-201 | ENST00000550242 | 609 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | ELK3-206 | ENST00000552142 | 1242 nt | TSL 5 BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | PSMA3-AS1-206 | ENST00000555037 | 446 nt | TSL 1 (best) BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | CTSLP2-201 | ENST00000580501 | 394 nt | BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC005208.1-202 | ENST00000587325 | 725 nt | TSL 3 BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC006262.2-201 | ENST00000599127 | 612 nt | TSL 3 BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | ZNF677-211 | ENST00000601828 | 719 nt | TSL 2 BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | EDRF1-AS1-210 | ENST00000613304 | 569 nt | TSL 5 BASIC | 6.99 | □□□□□ -1.29 | | |
| HDAC11 | Q96DB2 | AC009283.1-201 | ENST00000615852 | 645 nt | BASIC | 6.99 | □□□□□ -1.29 | | |