Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.48■□□□□ 0.71
VRK3Q8IV63 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.48■□□□□ 0.71
VRK3Q8IV63 AC008403.3-201ENST00000598924 454 ntBASIC19.48■□□□□ 0.71
VRK3Q8IV63 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VRK3Q8IV63 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.48■□□□□ 0.71
VRK3Q8IV63 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VRK3Q8IV63 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VRK3Q8IV63 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.48■□□□□ 0.71
VRK3Q8IV63 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VRK3Q8IV63 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VRK3Q8IV63 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VRK3Q8IV63 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VRK3Q8IV63 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VRK3Q8IV63 UNC93B4-201ENST00000505679 747 ntBASIC19.47■□□□□ 0.71
VRK3Q8IV63 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.47■□□□□ 0.71
VRK3Q8IV63 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VRK3Q8IV63 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.47■□□□□ 0.71
VRK3Q8IV63 MIR4651-201ENST00000582622 73 ntBASIC19.47■□□□□ 0.71
VRK3Q8IV63 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
VRK3Q8IV63 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VRK3Q8IV63 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
VRK3Q8IV63 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VRK3Q8IV63 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VRK3Q8IV63 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
VRK3Q8IV63 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VRK3Q8IV63 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VRK3Q8IV63 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VRK3Q8IV63 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VRK3Q8IV63 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VRK3Q8IV63 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VRK3Q8IV63 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VRK3Q8IV63 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VRK3Q8IV63 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VRK3Q8IV63 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.46■□□□□ 0.71
VRK3Q8IV63 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.46■□□□□ 0.71
VRK3Q8IV63 RPS2P52-201ENST00000469610 820 ntBASIC19.46■□□□□ 0.71
VRK3Q8IV63 CD99P1-205ENST00000527459 561 ntBASIC19.46■□□□□ 0.71
VRK3Q8IV63 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.46■□□□□ 0.71
VRK3Q8IV63 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VRK3Q8IV63 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VRK3Q8IV63 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.46■□□□□ 0.71
VRK3Q8IV63 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.46■□□□□ 0.71
VRK3Q8IV63 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VRK3Q8IV63 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VRK3Q8IV63 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.46■□□□□ 0.71
VRK3Q8IV63 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VRK3Q8IV63 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VRK3Q8IV63 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VRK3Q8IV63 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
VRK3Q8IV63 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VRK3Q8IV63 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.45■□□□□ 0.7
VRK3Q8IV63 AC008687.6-201ENST00000596318 630 ntBASIC19.45■□□□□ 0.7
VRK3Q8IV63 AC120498.8-201ENST00000614275 531 ntBASIC19.45■□□□□ 0.7
VRK3Q8IV63 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.45■□□□□ 0.7
VRK3Q8IV63 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VRK3Q8IV63 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VRK3Q8IV63 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VRK3Q8IV63 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
VRK3Q8IV63 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VRK3Q8IV63 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.44■□□□□ 0.7
VRK3Q8IV63 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 PHGDH-210ENST00000641115 1638 ntBASIC19.44■□□□□ 0.7
VRK3Q8IV63 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.44■□□□□ 0.7
VRK3Q8IV63 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.44■□□□□ 0.7
VRK3Q8IV63 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.44■□□□□ 0.7
VRK3Q8IV63 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.44■□□□□ 0.7
VRK3Q8IV63 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.44■□□□□ 0.7
VRK3Q8IV63 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
VRK3Q8IV63 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.44■□□□□ 0.7
VRK3Q8IV63 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.44■□□□□ 0.7
VRK3Q8IV63 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.44■□□□□ 0.7
VRK3Q8IV63 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.44■□□□□ 0.7
VRK3Q8IV63 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VRK3Q8IV63 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VRK3Q8IV63 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VRK3Q8IV63 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VRK3Q8IV63 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VRK3Q8IV63 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VRK3Q8IV63 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VRK3Q8IV63 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 AP003097.1-201ENST00000530657 1135 ntBASIC19.43■□□□□ 0.7
VRK3Q8IV63 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms