Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TMA16-209ENST00000513272 803 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGCS2P54868 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGCS2P54868 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
HMGCS2P54868 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC23.06■■□□□ 1.28
HMGCS2P54868 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGCS2P54868 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC23.06■■□□□ 1.28
HMGCS2P54868 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGCS2P54868 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGCS2P54868 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGCS2P54868 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGCS2P54868 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGCS2P54868 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGCS2P54868 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
HMGCS2P54868 AL137013.1-201ENST00000432946 1228 ntBASIC23.05■■□□□ 1.28
HMGCS2P54868 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC23.05■■□□□ 1.28
HMGCS2P54868 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC23.05■■□□□ 1.28
HMGCS2P54868 SLC25A3P1-201ENST00000443844 931 ntBASIC23.05■■□□□ 1.28
HMGCS2P54868 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC23.05■■□□□ 1.28
HMGCS2P54868 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC23.05■■□□□ 1.28
HMGCS2P54868 ABBA01031674.1-201ENST00000635145 728 ntBASIC23.05■■□□□ 1.28
HMGCS2P54868 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
HMGCS2P54868 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGCS2P54868 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC23.05■■□□□ 1.28
HMGCS2P54868 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGCS2P54868 STK25-204ENST00000405585 1643 ntTSL 2 BASIC23.04■■□□□ 1.28
HMGCS2P54868 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGCS2P54868 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC23.04■■□□□ 1.28
HMGCS2P54868 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGCS2P54868 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC23.04■■□□□ 1.28
HMGCS2P54868 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC23.04■■□□□ 1.28
HMGCS2P54868 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGCS2P54868 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGCS2P54868 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC23.04■■□□□ 1.28
HMGCS2P54868 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC23.04■■□□□ 1.28
HMGCS2P54868 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC23.04■■□□□ 1.28
HMGCS2P54868 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC23.04■■□□□ 1.28
HMGCS2P54868 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC23.04■■□□□ 1.28
HMGCS2P54868 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGCS2P54868 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC23.04■■□□□ 1.28
HMGCS2P54868 AC073508.3-201ENST00000619697 1419 ntBASIC23.04■■□□□ 1.28
HMGCS2P54868 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
HMGCS2P54868 AC116351.2-201ENST00000606540 1585 ntBASIC23.04■■□□□ 1.28
HMGCS2P54868 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGCS2P54868 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC23.04■■□□□ 1.28
HMGCS2P54868 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGCS2P54868 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGCS2P54868 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGCS2P54868 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGCS2P54868 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGCS2P54868 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.03■■□□□ 1.28
HMGCS2P54868 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
HMGCS2P54868 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HMGCS2P54868 PPP1R14BP5-201ENST00000440334 435 ntBASIC23.03■■□□□ 1.28
HMGCS2P54868 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGCS2P54868 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC23.03■■□□□ 1.28
HMGCS2P54868 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC23.03■■□□□ 1.28
HMGCS2P54868 CFL2-205ENST00000555765 632 ntTSL 2 BASIC23.03■■□□□ 1.28
HMGCS2P54868 AL445675.2-201ENST00000620291 557 ntBASIC23.03■■□□□ 1.28
HMGCS2P54868 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGCS2P54868 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGCS2P54868 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
HMGCS2P54868 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGCS2P54868 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.02■■□□□ 1.28
HMGCS2P54868 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC23.02■■□□□ 1.28
HMGCS2P54868 TFP1-202ENST00000475455 1573 ntBASIC23.02■■□□□ 1.28
HMGCS2P54868 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGCS2P54868 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC23.02■■□□□ 1.28
HMGCS2P54868 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
HMGCS2P54868 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC23.02■■□□□ 1.28
HMGCS2P54868 RBM42-202ENST00000586618 771 ntTSL 3 BASIC23.02■■□□□ 1.28
HMGCS2P54868 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC23.02■■□□□ 1.28
HMGCS2P54868 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC23.02■■□□□ 1.28
HMGCS2P54868 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
HMGCS2P54868 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
HMGCS2P54868 FSCN1P1-201ENST00000568912 1481 ntBASIC23.02■■□□□ 1.28
HMGCS2P54868 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGCS2P54868 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGCS2P54868 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC23.02■■□□□ 1.28
HMGCS2P54868 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC23.02■■□□□ 1.28
HMGCS2P54868 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGCS2P54868 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
HMGCS2P54868 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23.01■■□□□ 1.27
HMGCS2P54868 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
HMGCS2P54868 AC006128.1-201ENST00000624704 1661 ntBASIC23.01■■□□□ 1.27
HMGCS2P54868 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC23.01■■□□□ 1.27
HMGCS2P54868 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
HMGCS2P54868 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
HMGCS2P54868 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC23.01■■□□□ 1.27
HMGCS2P54868 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
HMGCS2P54868 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC23■■□□□ 1.27
HMGCS2P54868 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
HMGCS2P54868 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HMGCS2P54868 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
HMGCS2P54868 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC23■■□□□ 1.27
HMGCS2P54868 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC23■■□□□ 1.27
HMGCS2P54868 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
HMGCS2P54868 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC23■■□□□ 1.27
HMGCS2P54868 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC23■■□□□ 1.27
HMGCS2P54868 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC23■■□□□ 1.27
HMGCS2P54868 NME3-204ENST00000563498 920 ntTSL 2 BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms